3ON0,3ON0


Conserved Protein Domain Family
Tra_M

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cd14804: Tra_M 
Click on image for an interactive view with Cn3D
TraM mediates signalling between transferosome and relaxosome
TraM is a plasmid encoded DNA-binding protein that is essential for conjugative transfer of F-like plasmids (e.g. F, R1, R100 and pED208) between bacterial cells. Bacterial conjugation, a form of horizontal gene transfer between cells, is an important contributor to bacterial genetic diversity, enabling virulence and antibiotics resistance factors to rapidly spread in medically important human pathogens. Mutation studies have shown that TraM is required for normal levels of transfer gene expression as well as for efficient site-specific single-stranded DNA cleavage at the origin of transfer (oriT). TraM tetramers bridge oriT to a key component of the conjugative pore, the coupling protein TraD. The N-terminal ribbon-helix-helix (RHH) domain of TraM is able to cooperatively bind DNA in a staggered arrangement without interaction between tetramers. This allows the C-terminal TraM tetramerization domains to be free to make multiple interactions with TraD, thus driving plasmid recruitment to the conjugative pore.
Statistics
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PSSM-Id: 271351
Aligned: 24 rows
Threshold Bit Score: 123.909
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramerDNA binding
Conserved site includes 55 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:2ON0: Escherichia coli plasmid conjugation factor, TraM, tetramer interface; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ####### #  # ##                   #  ## ###### ##                        ######
3ON0_A         1 MPKIQTYVnNNVYEQITDLVTIRKQEGIee--aSLSNVSSMLLELGLRVYMIQQEk-----REGGFNQm----EYNKLML 69  Escherichia coli
WP_001558305   1 MPRQNVYMkQKTLDGIRQLVDERLAEGAtpadvNMSSVCSELLETGLRVVQQLKKreqeeeKNGGLTDe---eLFRKRLL 77  Escherichia coli
WP_007853440   1 MGRLGIYLkDKIEREVRDIVAKDIQNGAspgeaNISATCNELIRLGLLVYKNREN------GEDKFDLe----GYRRDLL 70  Cronobacter sak...
YP_008098328   1 MGRVGIYLkDKIEREVRDIVQMDLQNGAnpseaNISATCNELIRLGLLVYKKNDS------DGNNFNLe----GFRRDLI 70  Enterobacter sp...
WP_019105066  20 MGRRNIYFkEKTEREVQEMVDMEIQNGAthgeiNFSSMVNELVGFGLMVKKHQDE------GGKFDLE-----GFNRDLI 88  Pantoea ananatis
WP_019106277   1 MGRLGIYVsSKIEKEIRDIYQLEIQSGAhpsevSLSSVCNELLRQGLIMHNAKKN------KDSFSQQ-----KWNREIL 69  Pantoea ananatis
YP_008144368   1 MGRLNIYVkQKIESEIRDIVQAEIQKGAatnemTISSMCNELLRLGLMVYKAQDE------DGSAFDVl----EFRRDLI 70  Serratia plymut...
WP_019843216   1 MPRKNIYFkDKIDREIQDILEIEIQKGAttsdmNYSSIVNELVRLGLMVYKSKEE------GSTFDLE-----GYRRDLI 69  Escherichia coli
ETT06931       1 MPRQHIYMkQKTLDGIRALVDKRRMEGAsnqeaNISSIGSELLEIGLRVVENLEKd-----KEKDDGLsl-eeRYKKQLL 74  Providencia alc...
ETS99215       1 MARQNVYMsQKVYDAIRTIVDERRADGAshadaNMSSVCSEMLDIGVRVTMNLKKk----aDETDDEGmtweeLYKKQML 76  Providencia alc...
Feature 1        ##################               #   ## ##  ##  ## 
3ON0_A        70 ENVSRVRAMCTEILKMSVlnqesiasgnfDYAVIKPAIDKFAREQVSIFFP 120 Escherichia coli
WP_001558305  78 EECMKSRLTTQAILNCMFdlteiksdsrhNYHEMISKFKQEIRESLQEFFP 128 Escherichia coli
WP_007853440  71 RKAAGSREGVVLISTLVAemyvk--mmgkEGEGRLEDTLDLLLSGINTAED 119 Cronobacter sakazakii
YP_008098328  71 KKVAGSREGMMILTALISeiy-----velKGDRAPLSLEDMINNNISAINT 116 Enterobacter sp. R4-368
WP_019105066  89 RKVSGTREGVSILIAMVSemy-----lnmRGENTSELMEELLDRNLSAIND 134 Pantoea ananatis
WP_019106277  70 RKVTGSYEAVLMILTMMNeiq-----lknAGSNDDAAIDAMLSQYLSAIKE 115 Pantoea ananatis
YP_008144368  71 KKAAASREAGVLITAMMSevy-----ervCGNTDRGEIDEVINKNLSAIYN 116 Serratia plymuthica 4Rx13
WP_019843216  70 KKVAGSREGMMILTALISeif-----vtvKGPGAGIMLDDLINNNISAIND 115 Escherichia coli
ETT06931      75 EEVTKSRQCIQVLFKMMFdlaeikddtryNYREYIEDFKNRTQSIVDEYFP 125 Providencia alcalifaciens F90-2004
ETS99215      77 EDSAKTRQCIQMIFQMLFnineikedsryDFREGIAEMKKETERLVEQFFN 127 Providencia alcalifaciens PAL-3

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