3VN5,2D0A


Conserved Protein Domain Family
RNAse_HIII_N

?
cd14796: RNAse_HIII_N 
Click on image for an interactive view with Cn3D
N-terminal domain of ribonuclease H3
RNAse H3 (HIII) is a bacterial type 2 ribonuclease, which endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, and plays a role in DNA replication and repair. The N-terminal domain characterized by this model has been shown to be important in substrate binding; it might form initial contacts with the substrate and not be part of the active complex that involves the C-terminal ribonuclease domain. This domain has also been characterized as DUF3378.
Statistics
?
PSSM-Id: 269819
Aligned: 43 rows
Threshold Bit Score: 65.7366
Created: 13-Nov-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
nucleic acid
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleic acid substrate binding site [nucleic acid binding site]
Evidence:
  • Comment:Site directed mutagenesis of Bacillus stearothermophilus Ribonuclease H3. This domain may form initial contacts with the substrate, and not be part of the active complex that involves the C-terminal ribonuclease domain.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #   # # # # #                
3VN5_A         2 PSLKISPSEAEKIQNYLVssgfRKINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLKEVLNLLE 69  Aquifex aeolicus VF5
B9E764         4 KVYLLTDEQSKKIEHVLPts-dTTNLPQGTKYRTKISGHTVTLYNSNKLMIQGADSEVIGEQILSKAG 70  Macrococcus caseolyticus
A5IS26         4 IVFKLSDKDITTLMSRITf--dTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHS 69  Staphylococcus aureus subsp...
WP_006341267  29 FVAAIDLSLAKQLQNDLIeqgfTLSTPPYTLFSAKKKGISCTLYQSGKLTVQGKDKDTFIEFYLEPHI 96  Parachlamydia acanthamoebae
Q6MDE6         7 FVTTLDLKLAEKLLKDLQqqgfSITIPAYTRFSASKKGLTCTLYTSGKLVVQGKEQAHFIEFYLEPEI 74  Candidatus Protochlamydia a...
Q9Z6J1         5 FVVTLTTSAQNNLRDQLKeknfIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGSEEFIEFFLEPEI 72  Chlamydophila pneumoniae
WP_022478818  21 HTKVLTDAQAEKLEAWLDkhlwAPYKVDYAKFAYKSRDVNVVVYTSGKLVVQGKGTEDFVAFVLEPEI 88  Coraliomargarita sp. CAG:312
Q5HQ34         4 VVYKLTSKEIQSLMAQTTf--eTTKLPQGMKARTRYQNTVINIYSSGKVMFQGKNAEQVASQLLPDKQ 69  Staphylococcus epidermidis
WP_018290211  40 FSFSLLPVQIEALRERLRqkgfEMRALEHGLFEGRGPSVIVRAYRSRKVLIQGSGAADFVEMFLEPEI 107 Verrucomicrobium sp. 3C
NP_219510      5 FVSQLSPSLFSILREQLEkkgfTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEI 72  Chlamydia trachomatis D/UW-...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap