1GVH


Conserved Protein Domain Family
HmpEc-globin-like

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cd14776: HmpEc-globin-like 
Click on image for an interactive view with Cn3D
Globin domain of Escherichia coli flavohemoglobin (Hmp) and related proteins
Flavohemoglobins (flavoHbs) function primarily as nitric oxide dioxygenases (NODs, EC 1.14.12.17), converting NO and O2 to inert NO3- (nitrate). They have an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD- and FAD-binding domain, and use the reducing power of cellular NAD(P)H to drive regeneration of the ferrous heme. They protect from nitrosative stress (the broad range of cellular toxicities caused by NO), and modulate NO signaling pathways. This subfamily includes Vibrio fischeri Hmp and E.coli Hmp. NO scavenging by flavoHb affects the swarming behavior of Escherichia coli, and protects against NO during initiation of the squid-Vibrio symbiosis. E.coli Hmp can catalyze the reduction of several alkylhydroperoxide substrates into their corresponding alcohols using NADH as an electron donor, and it has been suggested that it participates in the repair of the lipid membrane oxidative damage generated during oxidative/nitrosative stress.
Statistics
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PSSM-Id: 271309
Aligned: 6 rows
Threshold Bit Score: 226.194
Created: 17-Jan-2013
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1GVH: ferric Escherichia coli Hmp binds heme; contacts at 4A.
  • Comment:heme also contacts the C-terminal NAD- and FAD-binding domain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #         #  ##         #  ##                        
1GVH_A      2 LDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENL---------- 71  Escherichia coli
Q9KMY3      2 LTQEHINIIKSTIPLLESAGPALTQHFYQRMFSHNPELKHIFNMTHQKTGRQSVALFEAIAAYAKHIDNL---------- 71  Vibrio cholerae O1...
EFA85250    4 LDAKTIEIVKSTIPALAGTGSKLTQHFYARMLGNNPELKNVFNEANQRSNAQSEALFGAVCAYAQNIDNL---------- 73  Polysphondylium pa...
EKE77500    2 LSAETISLVKATLPVLANAGTAVTEHFYQRMFAHNPELKDIFNLSHQKSGRQPAALFAAVATYAQHIETP---------- 71  Gallaecimonas sp. ...
EPY21234   11 LSEHTIKVVEATAPVVAAAGPDLTAAFYQRMLTGNPELKDVFNLAHQHNMRQPKALFDSVVGYATHLRDL---------- 80  Crithidia deanei
E2RTZ4      3 LSEDTLRAVEATAGLIAAQGIEFTRAFYERMLTKNEELKNIFNLAHQRTLRQPKALLDSLVAYALNIRRInelyelkgkg 82  Giardia lamblia AT...
Feature 1                            ##         #  #                              #           
1GVH_A     72 -----------PALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFS--PGQEVLDAWGKAYGVLANVFINREAEI 138 Escherichia coli
Q9KMY3     72 -----------AALTSAVERIAHKHTSFNIQPEHYQIVGHHLLETLRELAPdaFTQPVEEAWTAAYFFLAQVFIDREGAL 140 Vibrio cholerae O1...
EFA85250   74 -----------APLLPAVEKIAQKHCSLNIKPEQYSIVGENLLATIDELLA--PPKEVIDAWAAAYGVLADIFIQREKEI 140 Polysphondylium pa...
EKE77500   72 -----------EMLAAAVERIAQKHTSFLVRPEHYAIVGEHLLATLQELAPdtFDAATSAAWAQAYQFLAGIFIDREGTL 140 Gallaecimonas sp. ...
EPY21234   81 -----------QALGPVVERIAQKHASFQITDAQYQIVGHHLLKTIEEKLN--PGADVIAEWGKAYEELANILIQREKAI 147 Crithidia deanei
E2RTZ4     83 lpvppehwaelQGFFSAAERVANKHTSFGIQPAQYQIVGAHLLATIEDRIT--KDKDILAEWAKAYQFLADLFIKREEEI 160 Giardia lamblia AT...
Feature 1      
1GVH_A    139 Y 139 Escherichia coli
Q9KMY3    141 Y 141 Vibrio cholerae O1 biovar El Tor str. N16961
EFA85250  141 Y 141 Polysphondylium pallidum PN500
EKE77500  141 Y 141 Gallaecimonas sp. 3-C-1
EPY21234  148 Y 148 Crithidia deanei
E2RTZ4    161 Y 161 Giardia lamblia ATCC 50803

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