1OUT,1GCW,1GCW,1HBR,1HBR,4HHB,4HHB,1CG5,3MKB,1CG5,1FDH,1SI4,1SI4,1FDH


Conserved Protein Domain Family
Hb

?
cd14765: Hb 
Click on image for an interactive view with Cn3D
Hemoglobins
Hb is the oxygen transport protein of erythrocytes. It is an allosterically modulated heterotetramer. Hemoglobin A (HbA) is the most common Hb in adult humans, and is formed from two alpha-chains and two beta-chains (alpha2beta2). An equilibrium exists between deoxygenated/unliganded/T(tense state) Hb having low oxygen affinity, and oxygenated /liganded/R(relaxed state) Hb having a high oxygen affinity. Various endogenous heterotropic effectors bind Hb to modulate its oxygen affinity and cooperative behavior, e.g. hydrogen ions, chloride ions, carbon dioxide and 2,3-bisphosphoglycerate. Hb is also an allosterically regulated nitrite reductase; the plasma nitrite anion may be activated by hemoglobin in areas of hypoxia to bring about vasodilation. Other Hb types are: HbA2 (alpha2delta2) which, in normal individuals, is naturally expressed at a low level; Hb Portland-1 (zeta2gamma2), Hb Gower-1 (zeta2epsilon2), and Hb Gower-2 (alpha2epsilon2), which are Hbs present during the embryonic period; and fetal hemoglobin (HbF, alpha2gamma2), the primary Hb throughout most of gestation. These Hb types have differences in O2 affinity and in their interactions with allosteric effectors.
Statistics
?
PSSM-Id: 381278
Aligned: 14 rows
Threshold Bit Score: 172.921
Created: 19-Sep-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
heme bindingtetramer
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1SI4: Human HbA2, delta subunit binds heme; contacts at 4A
  • Structure:1FDH: Human HbF, gamma subunit binds heme; contacts at 4A
  • Citation:PMID 881729
  • Structure:4HHB: Human deoxyhemoglobin alpha subunit binds heme; contacts at 4A
  • Citation:PMID 5528692
  • Structure:1CG5: Dasyatis akajei deoxyhemoglobin beta subunit binds heme; contacts at 4A
  • Structure:1HBR: Gallus gallus R-State form of hemoglobin D alpha subunit binds heme; contacts at 4A
  • Citation:PMID 6644819

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                               #      #  ## ##                 #  ##  ##             
1OUT_B      7 EKSTISAVWGk--VNIDEIGPLALARVLIVYPWTQRYFGSFgnvstpaaimgnpkVAAHGKVVCGALDKAVKNMGNILAT 84  rainbow trout
1GCW_A      6 EKQTIGKIAQvlaKSPEAYGAECLARLFVTHPGSKSYFEYKdysa------agakVQVHGGKVIRAVVKAAEHVDDLHSH 79  Mustelus griseus
1GCW_B      7 ERDEISKTFQg--TDMKTVVTQALDRMFKVYPWTNRYFQKRtd----------frSSIHAGIVVGALQDAVKHMDDVKTL 74  Mustelus griseus
1HBR_A      6 DKKLIQQAWEkaaSHQEEFGAEALTRMFTTYPQTKTYFPHFdlsp------gsdqVRGHGKKVLGALGNAVKNVDNLSQA 79  chicken
4HHB_A      6 DKTNVKAAWGkvgAHAGEYGAEALERMFLSFPTTKTYFPHFdlsh------gsaqVKGHGKKVADALTNAVAHVDDMPNA 79  human
3MKB_A      6 ERSTIGAIAKilaSTPEAYGAEALARLFATHPGAKSYFDYAdysa------agakVQLHGGKVIRAVVSAAEHDDDLHAH 79  Isurus oxyrinchus
1CG5_B      7 QEHYIKGVWKd--VDHKQITAKALERVFVVYPWTTRLFSKLqglfs----andigVQQHADKVQRALGEAIDDLKKVEIN 80  red stingray
1FDH_A      6 DKTNVKAAWGkvgAHAGEYGAEALERMFLSFPTTKTYFPHFdlsh------gsaqVKGHGKKVADALTNAVAHVDDMPNA 79  human
1SI4_A      6 DKTNVKAAWGkvgAHAGEYGAEALERMFLSFPTTKTYFPHFdlsh------gsaqVKGHGKKVADALTNAVAHVDDMPNA 79  human
1SI4_B      7 EKTAVNALWGk--VNVDAVGGEALGRLLVVYPWTQRFFESFgdlsspdavmgnpkVKAHGKKVLGAFSDGLAHLDNLKGT 84  human
Feature 1        #  ##   # #   ##  #                                  # 
1OUT_B     85 YKSLSETHANkLFVDPDNFRVLADVLTIVIAAKFgasFTPEIQATWQKFMKVVVAAMG 142 rainbow trout
1GCW_A     80 LETLALTHGKkLLVDPQNFPMLSECIIVTLATHLt-eFSPDTHCAVDKLLSAICQELS 136 Mustelus griseus
1GCW_B     75 FKDLSKKHADdLHVDPGSFHLLTDCIIVELAYLRkdcFTPHIQGIWDKFFEVVIDAIS 132 Mustelus griseus
1HBR_A     80 MAELSNLHAYnLRVDPVNFKLLSQCIQVVLAVHMgkdYTPEVHAAFDKFLSAVSAVLA 137 chicken
4HHB_A     80 LSALSDLHAHkLRVDPVNFKLLSHCLLVTLAAHLpaeFTPAVHASLDKFLASVSTVLT 137 human
3MKB_A     80 LMVLAVTHGKkLLVDPSNFPMLSECILVTLATHLa-eFSPATHCAVDKLLSAISSELS 136 Isurus oxyrinchus
1CG5_B     81 FQNLSGKHQE-IGVDTQNFKLLGQTFMVELALHYkktFRPKEHAAAYKFFRLVAEALS 137 red stingray
1FDH_A     80 LSALSDLHAHkLRVDPVNFKLLSHCLLVTLAAHLpaeFTPAVHASLDKFLASVSTVLT 137 human
1SI4_A     80 LSALSDLHAHkLRVDPVNFKLLSHCLLVTLAAHLpaeFTPAVHASLDKFLASVSTVLT 137 human
1SI4_B     85 FSQLSELHCDkLHVDPENFRLLGNVLVCVLARNFgkeFTPQMQAAYQKVVAGVANALA 142 human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap