Conserved Protein Domain Family
SSDgbs_2

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cd14764: SSDgbs_2 
Sensor single-domain globins; uncharacterized subgroup
This subfamily of sensor single-domain globins, belongs to a family that includes GCSs (globin-coupled-sensors) and single-domain protoglobins (Pgbs). For GCSs, an N-terminal heme-bound oxygen-sensing/binding globin domain is coupled to a C-terminal functional/signaling domain. The first signal O2 binds to/dissociates from the heme in its sensor domain inducing a conformational change in that domain and ultimately in the signaling domain. It has been demonstrated that the Pgbs and other single domain globins can function as sensors, when coupled to an appropriate regulatory domain.
Statistics
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PSSM-Id: 381277
Aligned: 8 rows
Threshold Bit Score: 222.299
Created: 4-Sep-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
heme bindinghomodimer
Feature 1:heme binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   #  #        #  ##  #              
CCG91823   13 LEQMPESCRF-NKEDGEKLLSLRPYLYPLEDKLVKGFYDLLYnhPPTASIFDptereNREWTLRNWWRRTLDGpFDLQYW 91  Methylacidiphilum ...
ADN51092   22 MNQIPPQARF-NDSDISIIMKYRPLLESITGDIVKGFYDTLFshGPTAAVFQaderpLREKTLRDWWIRTLRGpFNEDYW 100 Vulcanisaeta distr...
ADW21791   20 WSQLPPSARFrPLEDARAFSRHKELMRGWVGQVVQGFYDTLFghPATRAIFRegerpAREKTLRDWYLRTVEGpFNGQYF 99  Thermus scotoductu...
AFV77402   14 IGQMPPETRF-RPEDAQAIARHRALLLSWTEELVQKFYDTLFahPPTRAVFRegerpEREETLRNWWRKTVGEdVGEGYF 92  Thermus oshimai JL-2
ADW21816   13 LEQMPAETRL-RPEDTQVILQHKDVLLSWSRELLQTFFDTLFahPPTRRIFRegerpDRETTFLAWWERTVEGpLDEEYF 91  Thermus scotoductu...
EIJ34954   11 LQQVPAILIP-TASDGELVRRYQGFFKKHEDTVIRGFYDLVYsdPATRQHLDpkerpMRENTLRQWYQVTTTGhFDEHYW 89  Thiothrix nivea DS...
EIJ41992    6 LKDMMTLTGL-SEKDYEILRKYAPQLELWADALVTVFYDTLYayEPTAAVFQdnerkTREGTLKAWYLAVVKGnYDKHFW 84  Beggiatoa alba B18LD
ADR35634   11 IGDMPPETRF-RPEDAEVIRAHRDLILPLAEEYVTSFYDVLFahEPTRAVFEegerpEREATQVDFFRRIVEGpHDDEFF 89  Oceanithermus prof...
Feature 1          #  ##    #   #   ##                                       #    
CCG91823   92 TWQAAVGIIHIRRKVKNPMMIGMWGWILNFIGKEISNYls--ynEFLSATEVLHRLAATAQALTAESY 157 Methylacidiphilum fumariolicum...
ADN51092  101 LWQTYVGIIHYRRSVTPPMFMGMWAWIIDNVIKKVQASpe--liSALVKFGVTQSSLMVGGYYDIMEY 166 Vulcanisaeta distributa DSM 14429
ADW21791  100 AWQTLVGLVHVRRGVTNAMMAAMWNWVVDTVSRLAREHls--qeEAQVLADAWRRLGFTVMALISEGY 165 Thermus scotoductus SA-01
AFV77402   93 AWMAYVGLVHVVRKVENPMMLAMANFVVEFVKEKATKVtasgdlDVLEVVEAFQRLAGTVAAIITYGY 160 Thermus oshimai JL-2
ADW21816   92 AWMAKVGLAHVVRGVESPMMLAMASFVASFVDKQAQSLsl---pGAEALAGAFYRLSTTLGAVITHAY 156 Thermus scotoductus SA-01
EIJ34954   90 AWQALVGIVHVKHKIPNPAMLGMWSWMINFIQKGLLEElp--anEALDVIQVFQKLQATVCSLIVESY 155 Thiothrix nivea DSM 5205
EIJ41992   85 EQQWTVGLIHIAKRVTNPYMLGMTSRLQQVFLNKCLCTfs--qsETEQVYGAFKRMTDTIAGIIAEGY 150 Beggiatoa alba B18LD
ADR35634   90 AWLAFVGPVHVVRQVSNPMMLAMLDYMVLYVMKKFRGHe-----NADAVTEAFVRLAATLGAIISYGY 152 Oceanithermus profundus DSM 14977

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