3JZJ,3K01


Conserved Protein Domain Family
PBP2_GacH

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cd14751: PBP2_GacH 
Click on image for an interactive view with Cn3D
The periplasmic-binding component of the putative oligosacchride ABC transporter GacHFG; possesses type 2 periplasmic binding fold.
This group represents the periplasmic component GacH of an ABC import system. GacH is identified as a maltose/maltodextrin-binding protein with a low affinity for acarbose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270454
Aligned: 11 rows
Threshold Bit Score: 519.629
Created: 18-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3JZJ; Streptomyces glaucescens GacH receptor binds acarbose, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                            ##          
3JZJ_A        26 TVTFWDtsne---aekaTYQALAEGFEkehpkVDVKYVNvpfge-anakFKNAAGGNsgAPDVMRteVAWVADFASIGYL 101 Streptomyces gl...
3K01_A        29 TVTFWDtsne---aekaTYQALAEGFEkehpkVDVKYVNvpfge-anakFKNAAGGNsgAPDVMRteVAWVADFASIGYL 104 Streptomyces gl...
EGL37211      61 TVTYWHthsda--eeevLTEQIIPEFEkrypkIHIDAVRmpydglmqqiITGISGNT--GPDLMRmdIIWVPELAKMGAL 136 Oribacterium sp...
AEI40692      31 SLTFWTttsp---aetkFFQKRIDAYVrehpqIQVTMKQrafpfatnefKTAVLGDQ--PVDIFRadHTWIAEYAELDIV 105 Paenibacillus m...
EGN34493      57 TINFWHhysaqsaenetLMNVLIPEFEkenpgIKVNAVShewadlhdkiLINAKADT--LPDVARldSAWIPEFQKMGIL 134 Lachnospiraceae...
YP_001664266  48 TIEFWHtfsdt--edkiLNEQIIPDFEqkypnIKVKATRmpydglkqqvISAVAGNA--TPDVMRmdIIWVPEFAKLGAL 123 Thermoanaerobac...
AEC02270      36 TLNFWHhysaqskenetLTKVLIPRFEaenpgIKVNAVShewaelhdkiLVSSSAMS--LPDVARcdIAWLPEFEKMGIL 113 Spirochaeta coc...
AAQ91300      85 TIEYWHtysda--eekvLKEKVKPAFEaaypnIELKLTRmpyeglkqqvIAGVAGDA--APDLMRmdIIWVPEFASQGAL 160 Paenibacillus s...
YP_001103910  32 RVVYWDtsnp---sessVFAEIARECGrt-ggYEVAVEAvsfdqalnnyKTAAQGGQ--GPDVLRadVGWVAQLARAGLI 105 Saccharopolyspo...
EFG06525      46 SITWWDtsne---aegpTYDKLVAAFQkeypkIKVDRTSvsfdqaeqkfKTAAQSGKg-APDVIRtdVGWSAGFANLGYL 121 Streptomyces cl...
EGL83927      38 TIQFWHtfnq---aeqeTISEIIEAFEeayphIKVQVQAvpfdqaqnqfKLAAQSGD--APDVFRaeIAWTPEFADLGYL 112 Caldalkalibacil...
Feature 1                                              #                                         
3JZJ_A       102 APldgtpalddgsd--hlpqaaastryEGKTYAVPQVIDTLALFYNKELLtka-gveVPGSVaelktaaae----itekt 174 Streptomyces gl...
3K01_A       105 APldgtpalddgsd--hlpqaaastryEGKTYAVPQVIDTLALFYNKELLtka-gveVPGSVaelktaaae----itekt 177 Streptomyces gl...
EGL37211     137 EPvddlegfkemkd-klfegplktnyyNGKYYGLPLNTNCLSGTWSKAVMeqlglkdFPKTYdevvalk--------dkl 207 Oribacterium sp...
AEI40692     106 YPlddlapssrwvg--yipsalessryRGQLYGLPSVTEVPALLYNKRLLaeagftgPPATMdellamak-----amtvs 178 Paenibacillus m...
EGN34493     135 LPldeemadfdavsgglldsamstaqiGGHFYGLALNTNTKILFYNQKALeda-glpVPADMdefvdtvkklsgnnengq 213 Lachnospiraceae...
YP_001664266 124 QPvdnlegfdaike-kafkgpmetnyfNGHYYGIPQDTNTKIAIYNKTLLqqagltePPKTFdelvaaae-----kikgk 197 Thermoanaerobac...
AEC02270     114 VPldrefedftqvagrilpsamstafvNGHYHGLGLNTNTKILFYNTKLLeda-klsVPTTMdewmtvvral--sgkntr 190 Spirochaeta coc...
AAQ91300     161 KNlgemegfdeika-nvfegpmatnlyEGNYYGVPVNTNTKIAIYNKDTLaeaglteAPKTMdelvaaae-----alkak 234 Paenibacillus s...
YP_001103910 106 QDlsgtplgtdtgd--flagplestkyEGRSYGVPQVTDTLALFYNKRKLdea-gvaPPKSWeelrdva-------pklg 175 Saccharopolyspo...
EFG06525     122 QPldgtpaldnvgd--flpgplstakwNGETVGVPQVTDTLGLLYNKEVFqeagiakPPATWdefiatakk----ikqkt 195 Streptomyces cl...
EGL83927     113 LEldeyvsdedlad--yldspmnynlyDGHIWGVPQATDALALLYNKRMLeea-glsVPTTMdefleaaqa---ltdesk 186 Caldalkalibacil...
Feature 1                      ##                                                                
3JZJ_A       175 gatGLYLRgd--dpYWFLPYLYGEGGDLVDek--nKTVTVDDEAGVRAYRVIKDLvdskAAITDasd---gwnNMQNAFK 247 Streptomyces gl...
3K01_A       178 gatGLYLRgd--dpYWFLPYLYGEGGDLVDek--nKTVTVDDEAGVRAYRVIKDLvdskAAITDasd---gwnNMQNAFK 250 Streptomyces gl...
EGL37211     208 nkdQYLIAcegpnpWSMAPLFNSLGGVYTNedytkASGYLDGEASIKAMETIVKWydegIIGPCmng---gkpDAANGLY 284 Oribacterium sp...
AEI40692     179 gryGLYVSed---sYFALPYLWAFGGGMVSe---dRRIEIASVDSQRALEFMVRLrregVTQPYpdfa-dwygRMMKDFA 251 Paenibacillus m...
EGN34493     214 qvwGYNEPal--agWNLCPFIWSCGGELTDpgqtkASGYINSPETVGAIQMLADLyaqgAITGWnsg----diPMTDGFG 287 Lachnospiraceae...
YP_001664266 198 drwGIAISgt--gpWGIAPYFLSLGGKVTDdkytkATGYLNSPESVAALQKLLDLynkkLIGPCilg---gqpDTWGGMK 272 Thermoanaerobac...
AEC02270     191 gqqVWGWNepslggWNLGPFIWSFGGAFTDpaqtkATGYLNSEETVRAIDAFVTLaregALTGFnsg----diPMTDGFG 266 Spirochaeta coc...
AAQ91300     235 gkyGIGISgv--haWALTPYFWSLGGTITNedytkVDGYLNSEASVKALETIVEWhnkgLIVPAllg---gepGAWDGLK 309 Paenibacillus s...
YP_001103910 176 gdkAFFINnd---eYYALPFLYTYGGDMVDaq--aRTIEVNSPESVRGLQMAKDLld-aGAARTaldqpnsygNMKAAFT 249 Saccharopolyspo...
EFG06525     196 gvtGTMLNpe---gYFSLPFLYGEGADMLDve--gKKITVASPEGVKAMETALQLtesdVALKPattd--gyvAAQTAFK 268 Streptomyces cl...
EGL83927     187 dqyGFFIRgd---aYWVQPFIWAFGGDLIDge--aREVKIAEPGSIEGTQFYVDLqnkyKVTPAtrdfsqdydNMQTGFK 261 Caldalkalibacil...
Feature 1                    #                                                                   
3JZJ_A       248 Sgk-vaMMVNGPWaiedvkag-----arfkdagnLGVAPVPagsa-gqgSPQGGWNLSVYAgsKNLDASYAFVKymssak 320 Streptomyces gl...
3K01_A       251 Sgk-vaMMVNGPWaiedvkag-----arfkdagnLGVAPVPagsa-gqgSPQGGWNLSVYAgsKNLDASYAFVKymssak 323 Streptomyces gl...
EGL37211     285 Dgq-ylFSYQGPWfyandd---------eeqiakVQGGLLPagsa-gslTVNGGEDLVIFNgsKVKDAAWVFAQflmsdy 353 Oribacterium sp...
AEI40692     252 EegkaaMIINGPWamgdilkg-----kvfqrgdqLGIAAVPkgpk-gqgSPVGGHSLVINKytKHPKESLELIAyltgte 325 Paenibacillus m...
EGN34493     288 Tgr-ymLLLEGPWkiaemqg--------aypdfaYGTAPMPagkg-gsvSVLGGEDISMFQs-ANKEAAWKFMQfmtspy 356 Lachnospiraceae...
YP_001664266 273 Gnn-ylMIDDGPWfysiqg---------daakqsTVPALFPqgpg-gsiSVVGGEDLVLFKttKHPKEAWIFMKymfset 341 Thermoanaerobac...
AEC02270     267 Tyr-yaMMLEGPWkvaelkg--------aypdvtYGMAPMPagkg-gssSVLGGEDIAMFTt-AKKDAAWKFMQfmtgkf 335 Spirochaeta coc...
AAQ91300     310 Sge-ymMVDDGPWfysilsseqemansgfdpmekTVRGLIPagpg-gsrSVIGGENLVIFEnsKHPEEAWTFAKwmlsee 387 Paenibacillus s...
YP_001103910 250 Sge-vaMVVDGPWaaaeyles-----pefadpanLGIAQVPgsa---tpSPVGGHDYVIRQgsDASEAATKFVEcmsstp 320 Saccharopolyspo...
EFG06525     269 Dgk-vaMIVNGPWsvsdsygg-----kafknkdnLGIANIPagstgkaaAPIGGHNYSVYRgsGNKDAAYLFVKfmssak 342 Streptomyces cl...
EGL83927     262 Egr-iaMILNGPWstsdilsg-----sefsdpdnLGIAPIPvgptgltgSPVGGHNYVIYKgtQYPDEAYTFIEfinsae 335 Caldalkalibacil...
Feature 1                                                   #         #  #                       
3JZJ_A       321 vq-qqtteklsLLPTRTSvyevpsvadnEMVKFFKPAvdkaveRPWIAEGNALFEPIRLQMANvlsgetsPDEAAANTGD 399 Streptomyces gl...
3K01_A       324 vq-qqtteklsLLPTRTSvyevpsvadnEMVKFFKPAvdkaveRPWIAEGNALFEPIRLQMANvlsgetsPDEAAANTGD 402 Streptomyces gl...
EGL37211     354 aqtaqavggghLVPTVKSvaeseevkntPYMDIYLKQlegavpRTPTPVWEKMSDKLTVAFTScllhedePASALKKAAT 433 Oribacterium sp...
AEI40692     326 tq-vlqsmefkTLPTKSAayederlaqdAMVQGFKAQldtarpRPMIPEGARLFMDFTPNLNAmllgkqsVQEGVRNIET 404 Paenibacillus m...
EGN34493     357 aq--eemakcgQIPVNEEalesd-tvkeADFAPFIDAiktaksRPTVASWSEIDSELATAVTAvmngdktAREAMDELAV 433 Lachnospiraceae...
YP_001664266 342 pq-kllakqagLIPTNMDvanspevsgePIISLYVEQlktawpRTPSPNWGKIDETLGQAFEKvfrgkatPQQALDEAAK 420 Thermoanaerobac...
AEC02270     336 aq--temakagQIPVNQEalkte-evknAEFSPFLSAietakaRPTVSVWTEIDNLLSMTISNiirenkdVRTSLDALAA 412 Spirochaeta coc...
AAQ91300     388 pq--kmmaelgLIPANKAaaeamkemniPFVAEYVQQletalpRPPIAKWGEMEAIFNLAFEKairgemkPKEALDEAAA 465 Paenibacillus s...
YP_001103910 321 nq-iavaerlgLLPTRRSaydspavtgnRMVAAFKPMvdsahsRAWIPEGAELLDPLQTAFADilagredTRTTLDGTAK 399 Saccharopolyspo...
EFG06525     343 sq-eltakeinTLPTRTSaytaa-vtadPAKKAFQQAlsvsrsRPVIPGVGDLFVAFDQHYVKilrgdvsPEDGLKALAK 420 Streptomyces cl...
EGL83927     336 sq-akfainnnILPTRASayeipevaenRLVADFQAViekatnRPVIPEGGAIYTDFTPAIQSaileevsVEEALKEVEK 414 Caldalkalibacil...
Feature 1           
3JZJ_A       400 AYR 402 Streptomyces glaucescens
3K01_A       403 AYR 405 Streptomyces glaucescens
EGL37211     434 EID 436 Oribacterium sp. oral taxon 108 str. F0425
AEI40692     405 SWK 407 Paenibacillus mucilaginosus KNP414
EGN34493     434 KMD 436 Lachnospiraceae bacterium 3_1_57FAA_CT1
YP_001664266 421 QID 423 Thermoanaerobacter pseudethanolicus ATCC 33223
AEC02270     413 QVD 415 Spirochaeta coccoides DSM 17374
AAQ91300     466 QIE 468 Paenibacillus sp. Dex70-1B
YP_001103910 400 LYK 402 Saccharopolyspora erythraea NRRL 2338
EFG06525     421 EWN 423 Streptomyces clavuligerus ATCC 27064
EGL83927     415 AWN 417 Caldalkalibacillus thermarum TA2.A1

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