3WEU,3WEV


Conserved Protein Domain Family
LodA_like

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cd14730: LodA_like 
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L-lysine epsilon-oxidase from Marinomonas mediterranea and similar proteins
L-lysine epsilon-oxidase is responsible for oxidative deamination of L-lysine, producing L-2-aminoadipate-6-semialdehyde. Hydrogen peroxide is a side-product of this enzymatic reaction, which requires the cofactor CTQ (cysteine tryptophylquinone). CTQ most likely forms a Schiff base with the free amino acid substrate. The protein is also called marinocine, for its broad-spectrum antibacterial activity; the latter is most likely caused by hydrogen peroxide synthesis. Homologs of LodA have been detected in various gram-negative bacteria, and they appear to be associated with the formation of biofilms.
Statistics
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PSSM-Id: 269830
Aligned: 23 rows
Threshold Bit Score: 494.185
Created: 2-Mar-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative active
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1: putative active site [active site], 5 residue positions
Conserved feature residue pattern:x [CS] D C [QEH]Click to see conserved feature residue pattern help
Evidence:
  • Structure:3WEV: LodA from Marinomonas mediterranea binds the substrate, L-lysine; contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3WEU_A         1 MALSVHPSIGVARLGNa------------nTDNFVLNPMEIGGLPyehdvdl-----------kptttvVNFKDEAGXIR 57  Marinomonas med...
3WEV_A         1 MALSVHPSIGVARLGNa------------nTDNFVLNPMEIGGLPyehdvdl-----------kptttvVNFKDEAGCIR 57  Marinomonas med...
XP_002474554  15 SRIEIYPPIGIARLGDsgfdlv--tghtcgEPQYFFPPEVPGHDQfppg----------------glvnGAFRDRWQRIK 76  Postia placenta...
EJF58812      24 ARVAIFPPIGIARVGDsgtqldgkadeahpEIEYFYGPEVPGLDEhp---------------------fGSFRDSQGRIK 82  Dichomitus squa...
CCM05259       9 SYIQIFPPIGIARLGDsgfnld--tgepdgDIEYFLSPEVPGSDDvspavnnsfrdskyrikrmvcsfeFPLASVNKKYA 86  Fibroporia radi...
EDR13863      25 VRLEIFPPIGIARVGDs-------------EIECFLAPEVPGRTYppnglrm-----------rpngqeFKFRDAHQRLR 80  Laccaria bicolo...
WP_007331455   1 MRYRIYPPIGIARVGS--------------DPEFFLTPEKGPGLHsepdka------------gdtrvtRFKSANGKAMR 54  Rhodopirellula ...
YP_004312754  49 HRLGIYPTIGICRVGG--------------SDQYFLAPEVPGLPPmp---------------------eGGFKDGTQAIK 93  Marinomonas med...
YP_004418806   6 KSIRVHPGIGIARLGD--------------SDEFYIGPEAPGVVVdpggnd------------gpgpngGSYRDSGARLK 59  Pusillimonas sp...
WP_020043212   6 TRIRVHPGIGIARLGDse----------dpETKYFIGPEAPGAVPdpgppe------------gpgpegGSYRDAEMRLK 63  Salipiger mucosus
Feature 1                                                                                        
3WEU_A        58 RQGQVFKVFGAs-----NEELTLDspnVKNIEWTVHLANKKAAWYEFRELNGnllygrdnsysar--gvpwrnasktasS 130 Marinomonas med...
3WEV_A        58 RQGQVFKVFGAs-----NEELTLDspnVKNIEWTVHLANKKAAWYEFRELNGnllygrdnsysar--gvpwrnasktasS 130 Marinomonas med...
XP_002474554  77 RQAVVFHVYAFnknneiLGELLPGs--GVTINWTVHVVNSKPSFTTFRGIYAnlgvhprselylvqesigrllqsyetpM 154 Postia placenta...
EJF58812      83 RQAARFRVYAYddqgkvLGEINNAh--GYSLTWKVHVANKKAAYFLSRGRLGqvntdlrnpdvdp-vdnasgdpfdlslE 159 Dichomitus squa...
CCM05259      87 IQAVRFRAYAYdkngknLGEIKSGdksQYTLTWTVHVANHKGAYHTFRGQYStadislrnp----------dvqptttyD 156 Fibroporia radi...
EDR13863      81 RQAVRFRVYAYdahdklLGEVNSEn--GYILNWTVQVANKKAANYVHQRGGHfdp----------------------heT 136 Laccaria bicolo...
WP_007331455  55 KQAVRFHIFQSedg-esWEPLQLEd--GGVVEWSVSIENKKSAVVRPSNPPTapth-------------------pslmP 112 Rhodopirellula ...
YP_004312754  94 KQAQRFRIYAFddqdrvIGEITEH---NATIEWNVHLANTKAAWYGFNNPLDngelapgipgq------krnqyfvsdeE 164 Marinomonas med...
YP_004418806  60 RQAQRYRVYAYdaddkvIAELTSDsdlVQSLNWRVHVRNMKAANYAFQGAYLfdpdalrnp----------siqpgkkpI 129 Pusillimonas sp...
WP_020043212  64 RQAQRFRVYAYdandtcIGELTTAe--CESISWRVHVRNMKAANYAFQGAYLfdptqlrnp---------niqgdtadpI 132 Salipiger mucosus
Feature 1                                                                                        
3WEU_A       131 ERQSLIIDLGPRSVSgv------mATVEIsiNNIPETy---lHPSYPSgellq-----------------gskhFESLGT 184 Marinomonas med...
3WEV_A       131 ERQSLIIDLGPRSVSgv------mATVEIsiNNIPETy---lHPSYPSgellq-----------------gskhFESLGT 184 Marinomonas med...
XP_002474554 155 CSLTLIVDPGQLSITv--------GPTSEm-KNSWVPi----VGAFYGsqa--------------------tptSVSLGQ 201 Postia placenta...
EJF58812     160 SRKRLIIDPGPQVIG---------GQKGTapVPLDGKf----QGSAREp------------------------rPVRLGE 202 Dichomitus squa...
CCM05259     157 NRTDLIVDAQEQQIS---------GLKMI--TDLKGGf----KGSKANp------------------------vEVHLGQ 197 Fibroporia radi...
EDR13863     137 ALRNPKIQPDLNLEDrsllivadeGAIAS--TDPLNTfvllnKGTFQGs-------------------------RVELAQ 189 Laccaria bicolo...
WP_007331455 113 NSGNLHIVGGSRSIS---------GANELa-APFVDTf---tVDQFSA--------------------------DVNLGR 153 Rhodopirellula ...
YP_004312754 165 RERMLVINGGERSIS---------GINQNgdTENDTYq---fVGQFWNe------------------------eTVKLGK 208 Marinomonas med...
YP_004418806 130 ERDKLIIDPGVHTIAs--------GQAGPi-VMKGDVftgieKGTLPGelrfegftpkdl--sqevevtykaakDIELGQ 198 Pusillimonas sp...
WP_020043212 133 DRTDLIIDPGPQTIDq--------GQSEEl-RLAGDVftnvgESQLPGyldyddpelctrdpaqfvtvtytpatDVEIGR 203 Salipiger mucosus
Feature 1                                                                                        
3WEU_A       185 LRTDsqGRLIVLGGYGFAGGn------------------------------tDLSGYGGGDDWYDDISDGSVTCVVTYSD 234 Marinomonas med...
3WEV_A       185 LRTDsqGRLIVLGGYGFAGGn------------------------------tDLSGYGGGDDWYDDISDGSVTCVVTYSD 234 Marinomonas med...
XP_002474554 202 ISTDdkGRLIFVAGAGYSRCvsdpkq---------------------phfqpDIISEFDSIDWVDDVCDGWIDVAITYTS 260 Postia placenta...
EJF58812     203 LRTDdhGRLVFLGGSGHSHSvqvddnp-------------------qfikqpDIISEFDSVDYYDNMCDGWVEVSVEHPG 263 Dichomitus squa...
CCM05259     198 IRTDehGRLIFIGGAGYSRSvadpsq---------------------phfqpDIISAFDSIDWVDDTCDGWVNVTVKHPD 256 Fibroporia radi...
EDR13863     190 LQRDtrGRLVFVPGKGEARSivnps-----------------------kpqpPIISAMDSSNWIDEICDGQVKVVVTRAG 246 Laccaria bicolo...
WP_007331455 154 LATDsrGRLIVMGGDGAAGApagtp-----------------------igggGGTSYYRNPNWFDDVADGPVKATVRING 210 Rhodopirellula ...
YP_004312754 209 IKTDehGRLIVIPPDGVSNSpt----------------------------naAITSFADNDGWHDDWCDGPVQATVKLPD 260 Marinomonas med...
YP_004418806 199 LRLDskDRLLFVPAPGKGECvttpkvelsnpsetv---sppngpdngknpltNQFAYFNIPGWWDDTCGGEIDVTVTLKD 275 Pusillimonas sp...
WP_020043212 204 IKADdaGRLIFIAGPGKADCvttpriklsnpsehfeapngptledrryqplvNQFAYFNVPGWWDDTCGGEIDATVVLKD 283 Salipiger mucosus
Feature 1                                                                                        
3WEU_A       235 D-----------------SSETSTAWMVVGSPDFAPEIVNISTLSDTCFDVGVRNFDLvpdmydsatghyksdyvANFDR 297 Marinomonas med...
3WEV_A       235 D-----------------SSETSTAWMVVGSPDFAPEIVNISTLSDTCFDVGVRNFDLvpdmydsatghyksdyvANFDR 297 Marinomonas med...
XP_002474554 261 Ktgq-----------avrVHAQHKATVMSAPPKFAWGVHAPTTLYDIIEDIYAREKKWtapn----------evpVQFYE 319 Postia placenta...
EJF58812     264 Rpql-----------aaqIPKPHRATVISAPPKFAWGIESPTSLYDILENIYNKQVKYeeh------------agTDFYK 320 Dichomitus squa...
CCM05259     257 Lae--------------iLAALQKSTILVAPPRFVWGIQAPTTLYDLIANIYNKEKGWkdh------------egTLFYW 310 Fibroporia radi...
EDR13863     247 Tdh-------------kvGELGRPATVLSAPPNFAWGINAPTTLYDTIENIYREEEHPlvprp--------tvhsLDFWK 305 Laccaria bicolo...
WP_007331455 211 Qs---------------dPVDADPAWVVVGPPGYAPGIQGLVTMHDVLRQIGIDAFNQqep------------daVSYES 263 Rhodopirellula ...
YP_004312754 261 Gt----------------FMEADTAWVACIGPNFAPEIPPVTTLYDVISNMNAEQGWTppv-----------qapISFRK 313 Marinomonas med...
YP_004418806 276 GtvlstrddvksatdegtRNPRAGAWIVTAPPKFAPHMYHVVSILDRVYEAFPEAYPYtd-------------qkTNFYR 342 Pusillimonas sp...
WP_020043212 284 GtvlstrdgvtapgdagtRNAENGAWVVTAPPKYAPYMYHVVSIKDRVLEAFPEADPTrg-------------qpTDFYR 350 Salipiger mucosus
Feature 1                                                                                        
3WEU_A       298 DILPIIQRISQYQWvsnVQSMSGffs---fqfDYRDg-----------------SAANKANRMKYYNYFRQLDnkvig-- 355 Marinomonas med...
3WEV_A       298 DILPIIQRISQYQWvsnVQSMSGffs---fqfDYRDg-----------------SAANKANRMKYYNYFRQLDnkvig-- 355 Marinomonas med...
XP_002474554 320 HIWPTLGGTYGLSW---VNQQAFqgh---gpaGMGNfiqfek-------dlaskDASHAMHRKEVFERLRKPQye----- 381 Postia placenta...
EJF58812     321 DIWPVVSGTYKLSW---VNEKAFqgh---gpaGFGNfwpqep-------qlsstEIQYKALREHIFGRLREPDyr----- 382 Dichomitus squa...
CCM05259     311 DIWPVLLSCYTLSW---VNNEAYqgh---gvaGMGNflpiksk-----latpgkAMSDAILRDRIFKRLRAPDye----- 374 Fibroporia radi...
EDR13863     306 HIWPILLSASSLSW---TNNQAFqghg-vssnGHYNfwqvlelfvgdagddvelMNKRKYFKSRIFEKLRKPLnr----- 376 Laccaria bicolo...
WP_007331455 264 DVLPIITRAKLLRW---VHDDATw-------sATEF------------------DSPLLSSPDASAQQTREAV------- 308 Rhodopirellula ...
YP_004312754 314 HIYPIFRRLGLMEW---VSSAANlr------qGWLGvgnfsdpa--yikqladpSPANQAFRQDIFTKFRNPNnv----- 377 Marinomonas med...
YP_004418806 343 DVYPIFANAVNYGW---VSAEAAgtlpetknrAHGPgqpgnlllpqymalladpSEQSKPIRQRIYGLMRHAPgkngrlv 419 Pusillimonas sp...
WP_020043212 351 DVYPILSRAVNYGW---VSAEAAgvtpanrnlAHGPkqagnllseanlavlsdpSEAARFARSQIYRLMRDAEggsl--- 424 Salipiger mucosus
Feature 1                                              #                                         
3WEU_A       356 --dydqpQQVlmssev------egdilPLMPMNSGSNSVsssnfydl--tdnvvekfLALDATQLFLLGQWAEGEFTAGP 425 Marinomonas med...
3WEV_A       356 --dydqpQQVlmssev------egdilPLMPMNSGSNSVsssnfydl--tdnvvekfLALDATQLFLLGQWAEGEFTAGP 425 Marinomonas med...
XP_002474554 382 -----khAQAs---------------tMYMPRLSGDDGDaiepgqvipptsvpikrfAALTALQYSRFEKWAAGDFKTSR 441 Postia placenta...
EJF58812     383 ------nKDQah--------------vIFMPRLSGDRGDalepgvvp--hevsiqrfAALTALQYERFRDWKDGKFTKGA 440 Dichomitus squa...
CCM05259     375 ------kPDQas--------------tKFMPRLSGDGGDldrpgepig-sknlirnfAALTKLQYDHFSKWKDGDFLADD 433 Fibroporia radi...
EDR13863     377 -----hnPDQlqa------------dtRYMPRLSGDAGElpepgtftsnlqpdarkfAALTKLQHDRFRIWTNDDTFHLP 439 Laccaria bicolo...
WP_007331455 309 -------KDLils-----------aesILEGHVSSAGPP------------------YRIRTFQKQILDRWVAGDFVSGN 352 Rhodopirellula ...
YP_004312754 378 -----sdTAYld-------------erLKMPMMLGDGINydgs----------plqwFQFPHQQYQFLEYWAAGNFTNDF 429 Marinomonas med...
YP_004418806 420 dtllpapPQRptswknee--fqraedsSKMPKLWGTAGKplqnqqlg---ndfpdqfLSLTDWQLKHMKNWADGNFEVGA 494 Pusillimonas sp...
WP_020043212 425 ---ratlPDPppapagppvqarrgargNKMPKLWGTGGKplqnaqlg---nnlpnqyLSLTRNDLDRLRDWAEGNFETGA 498 Salipiger mucosus
Feature 1                                             #                                          
3WEU_A       426 Ad---------------dYPVSDMDTASIGNCVGLPMCPGIEMTWSLQNPVIYKDAYQikhyqdkayfdvngl------- 483 Marinomonas med...
3WEV_A       426 Ad---------------dYPVSDMDTASIGNCVGLPMCPGIEMTWSLQNPVIYKDAYQikhyqdkayfdvngl------- 483 Marinomonas med...
XP_002474554 442 Prwkdyes---iekvplkLQPLALTLAALEHSTGDPLYPGLETYWIAKDPSIYSSDVLslqsatipp------------- 505 Postia placenta...
EJF58812     441 Pftkkai-----eeydlqEQPIMLTRAILEQSIGDPLYPGIEVYWIAKLAETFDTAVKgiqppfr--------------- 500 Dichomitus squa...
CCM05259     434 Apwssykd---iesvpttLQPLFLTRAALEHTIGEPLYPGIEMSWEARESQMYVLERHpsskdsdpp------------- 497 Fibroporia radi...
EDR13863     440 AdgvlpiprerledvdlkDQTEELTRAILETAIGDPLYPGIEMYWIAKLNTTYDTNHAvkinppfr-------------- 505 Laccaria bicolo...
WP_007331455 353 Pidq------------seFSPETLTRASLDEAVGQGFCPGIEAGILLTDPSIYVDPFDyrldh----------------- 403 Rhodopirellula ...
YP_004312754 430 Eddkadaih-tiedvdlkLQPDALTEAALEPCSGGAFHPGVELTYYLRIPSMYARNYDnaadpfrlahrkrdklvqnigr 508 Marinomonas med...
YP_004418806 495 Lqdplsl-----eqlplaEQPHALDSSALQPTIGGGFHPGIEFPYLILYREYFAEAFRvgk------------------- 550 Pusillimonas sp...
WP_020043212 499 Pvpvqpl-----adypvaEQPFALDCAAVEPTIGGGFHPGIEFPYLICYPELFAGAFRvaq------------------- 554 Salipiger mucosus
Feature 1                                              #   #  #                                  
3WEU_A       484 ----------tperdeceeetgcePGDLTKRMACPWQADFFNCTIQTVNFsepsvnkasqtetvtsrthyewgnlpag-- 551 Marinomonas med...
3WEV_A       484 ----------tperdeceeetgcePGDLTKRMACPWQADFFNCTIQTVNFsepsvnkasqtetvtsrthyewgnlpag-- 551 Marinomonas med...
XP_002474554 506 ---------------fridytkvkPGHLSRGLSLPWQSDFSLCNTHWWPSgrpddvinirdwqrvvetgtsvsmpdfv-- 568 Postia placenta...
EJF58812     501 -----------------vnhdkvlPGFLSRGLSLPWQSDFSQCNTFWWPSarpddvavptmtpwnqskpnevrkpaipti 563 Dichomitus squa...
CCM05259     498 ---------------frinhdlfpAGHVCRGLSLPWQSDFNQCNTYWWPSsrpddiinilsldglphgvtpsrpdptird 562 Fibroporia radi...
EDR13863     506 -----------------intntilPGHLTRGLSLPWQCDFDLCKTHWWPSvrpddivpkvvfhatvqgsnnktdfdt--- 565 Laccaria bicolo...
WP_007331455 404 --------------------ntlePGDVTALMAQPWQADYLKCHTEWWPSqrpdlapqsdg------------------- 444 Rhodopirellula ...
YP_004312754 509 lltlekaekgdpalgtspplahqwAGDLTRWMGLPWQCDAFSCQQVLMQEdfptavwwpallpidvlpeenytqlmd--- 585 Marinomonas med...
YP_004418806 551 ---------------------dnePGAISAYMSSPWQGDFWSCNVAWWPTqrpdivfeydpktqtrtyk----------- 598 Pusillimonas sp...
WP_020043212 555 ---------------------gtePGSVAAYMSSPWQGDYWSCNTAWWPVqrpeivftydqsdgsrsyr----------- 602 Salipiger mucosus
Feature 1                                                                                        
3WEU_A       552 ------vsvpdqssvsatknvdekvplppayysyWXPPQSPWDVLTgeldtegqlhshlpagqqinyarginsysqmveh 625 Marinomonas med...
3WEV_A       552 ------vsvpdqssvsatknvdekvplppayysyWXPPQSPWDVLTgeldtegqlhshlpagqqinyarginsysqmveh 625 Marinomonas med...
XP_002474554 569 -------dkvsplrkkwsrglretpdypqdyypgSTDMVHQWQNLGfikqkkdyki------------------------ 617 Postia placenta...
EJF58812     564 ----vadltqiprrswteglrvtpddvssaffpgCTDMVRMWTGLGfvvrnds--------------------------- 612 Dichomitus squa...
CCM05259     563 isvdefiktvspqrrkwsrgirntpefpssfypgSTDMVRFWQKLGfvtklpdt-------------------------- 616 Fibroporia radi...
EDR13863     566 -------aitartkwtrglrdtvivtptqedwpgSDDMVRYWKYLGvvrktrnaft------------------------ 614 Laccaria bicolo...
WP_007331455 445 -----------------------sfkpwnrgaqtHEAMVANCERLGvvvks----------------------------- 472 Rhodopirellula ...
YP_004312754 586 --------eslddservkfyenradwkrgvagigYHANASYWDGITnmitlwermgfvvkrkg----------------- 640 Marinomonas med...
YP_004418806 599 ----------------ewfrgydadgeplsstdgFHQMEYAWSKLGmvlplkaedg------------------------ 638 Pusillimonas sp...
WP_020043212 603 ----------------ewfrgydshgqplsgsdgYDQMVYAWPKLGmvlpvkaegg------------------------ 642 Salipiger mucosus
Feature 1                                  
3WEU_A       626 wsalafirdrnqnndgfpfFTETERN 651 Marinomonas mediterranea MMB-1
3WEV_A       626 wsalafirdrnqnndgfpfFTETERN 651 Marinomonas mediterranea MMB-1
XP_002474554 618 ----------tdgptslavWLEEERC 633 Postia placenta Mad-698-R
EJF58812     613 ------------gppslpiWIETERN 626 Dichomitus squalens LYAD-421 SS1
CCM05259     617 ------------tvgglpmWLESERV 630 Fibroporia radiculosa
EDR13863     615 ----------drhgwqhsvFLEDERV 630 Laccaria bicolor S238N-H82
WP_007331455 473 --------------tdqevFVEVERD 484 Rhodopirellula baltica
YP_004312754 641 ---pkgagtgglsavpkemYVEVGRG 663 Marinomonas mediterranea MMB-1
YP_004418806 639 ---------sfvkdqgstvFVEQERS 655 Pusillimonas sp. T7-7
WP_020043212 643 ---------gfvmqngsvvYEEFERD 659 Salipiger mucosus

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