Conserved Protein Domain Family
mlta_related_B

?
cd14669: mlta_related_B 
putative domain B insert of mltA_type lytic transglycosylases
Escherichia coli MltA is a membrane-bound lytic transglycosylase comprised of two domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, which correspond to the 3D domain, named for 3 conserved aspartate residues. Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial lytic transglycosylases (LTs), which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond. Typically, peptidoglycan lytic transglycosylases (LT) are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, MltE is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane-bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and Family 4 of bacteriophage origin. While most of the LT family members are similar in structure and sequence with a lysozyme-like fold, Family 2 (including mltA) is distinct.
Statistics
?
PSSM-Id: 270617
Aligned: 8 rows
Threshold Bit Score: 112.127
Created: 2-Aug-2013
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:Ligand binding induces conformational change of the domains, facilitating tight binding of the oligosaccharide by both domains.
  • Comment:Contacts defined by comparison to mltA bound to chitohexaose

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
EMI72417     124 VIIEGRFYpEGDFIYPVLEIPSDLivkkdgngk----------------------------------------------- 156 Leptospira nogu...
AAU28604     168 AAVEARTNrGGAFLYPLYSNPGVVsvileskkynlktplcgv-----------------------------dplskvmrg 218 Legionella pneu...
WP_018576307 168 APLEARGKpSGAFLHPIYRNPGVVsasaesrklklktplcgi-----------------------------dpltkmars 218 Legionella shak...
EOQ97240     145 VRIHGRTKpEGEYQYPALSPPVSNpnni---------------------------------------------------- 172 Leptospira wolb...
EIN01224     143 LLNGSRQY-GGAFLYPVYGTPDDMlyldarrlpdsargtastaridgrmvipvtdttpgstrgvyvldlrdsvpdirdkk 221 Burkholderia te...
AET93652     165 VLRGSRKY-GAPYVYPVYGTPRDMlfldvrrlppnarsepvmariegrtvtplatlstgnakgvyalalgnsvpdirdkk 243 Burkholderia sp...
EKS70853     189 ILKGSRER-RAPYVYPVYGVPTDMlfldarrlppgargtpvpariegrnvvplstv--smsgktytlrvgdsvpdirdkk 265 Burkholderia sp...
ADU34778     163 EIAGSRTY-GAPFIYPVYGQPEDMlfadarklpagsgtvaakvegrnvvvqtglstrdmgapglyaldlsaitrdtldrk 241 Variovorax para...
Feature 1                                                     ####              ###      # #     
EMI72417     157 svgkivnevFVPYETRAELSHFSLwknrsKAIVYV-KIVDLHLAQLEGSALVKVPd-YTPFRITYSADNGKEYLSPAESL 234 Leptospira nogu...
AAU28604     219 fclknadgtYSVAPDREEIEHGALnp--kYIIGYLkDPNDSAFLMLQGSGSLLLD--GKLFHINYDGANGRPRTMLGRIV 294 Legionella pneu...
WP_018576307 219 yclknadgtYSVAPDRNEIDNGALdq--kHVIGYVkDPNDPPFLMLQGSGSLILD--GQLVHLNYDGFNGRPRVMLGRIV 294 Legionella shak...
EOQ97240     173 ------tseNPIHFLRERWKEKSIwekysKPIVFL-RLTDLHLAQLEGSALVQTEt-NESFRINYAADNGQNYISPSVYL 244 Leptospira wolb...
EIN01224     222 irlrldrdrIVPYYTRAEIERGALk---aPILAYVdDPVMLYSMQVQGAGKVRMSd-GTVRRFAYAEQNGRPFLPPVARK 297 Burkholderia te...
AET93652     244 lrlrlegnrIVPYYSRAQIERGRId---aPVLAYVaDPAMLYAMQLQGAGKIVLPdgVSVIRLAYAEQNGFAFNPPVASA 320 Burkholderia sp...
EKS70853     266 lrlrregadIVPYYARADIERGMSr---aPVLAYVeDPAMLYSMQLQGAGKIVLPdgKSVIRLAYAEQNGFAFNPPVASA 342 Burkholderia sp...
ADU34778     242 vrmriegkqLLPYYTREEIETKGApn--aKVLAFVsSATALYEMQIQGSGRIKLAn-GDTIRVAYAEQNGQPFRPTIAQA 318 Variovorax para...
Feature 1                                                                                        
EMI72417     235 KGic---------------------------------------------------------------------------- 238 Leptospira nogu...
AAU28604     295 QCaqdptcggnldkmercakd----------------------------------------------------------- 315 Legionella pneu...
WP_018576307 295 QCaqdptcggnidvmercakd----------------------------------------------------------- 315 Legionella shak...
EOQ97240     245 KGic---------------------------------------------------------------------------- 248 Leptospira wolb...
EIN01224     298 NSgsgqritvrgidveidvedesptggagnaspptpgdatggvpatrt-----qdddepvspllrgfklaaatpqgsapa 372 Burkholderia te...
AET93652     321 SGkgrkvlvrgveldldeggastqsvsgdsdtpqssllrgvgdvss---------peappespllrgfnlapgatpgvrp 391 Burkholderia sp...
EKS70853     343 GSkgrkilvrgveidleegsvstqnakndvggaasddvpqssllrgaqdadadgaspavhgdadgppqspllrgftlaks 422 Burkholderia sp...
ADU34778     319 ANgkprsavkvrgssielqlddg-------------------------------------------------------dd 343 Variovorax para...
Feature 1                                                              #  
EMI72417     239 ------------------sSLIPSDLKNCILKYP---KEVEAAILK-NPRYIFFKRE 273 Leptospira noguchii
AAU28604     316 -pkchdeaklrcnvskkirQSAASEKLIRQYLNNltpDKADNLRNR-DQSYVFFAKE 370 Legionella pneumophila
WP_018576307 316 -pkchdeaklrcnlskeirQSGGSEKQIRRYLDTl-sHAKATDLRSrDQSYVFFVSE 370 Legionella shakespearei
EOQ97240     249 ------------------pSLKPYHLSNCIQTKP---KEVTEAIFK-NPRYIFFEKE 283 Leptospira wolbachii
EIN01224     373 arpaasdnmagamskgsvaSKTGDVAAGASANNA---PVKRVFAIS-DPSYVFFRLI 425 Burkholderia terrae
AET93652     392 arvstsavasparpvtpvtPATPATPATPLASTP---PLAAAFAAS-DPSYVFFRTI 444 Burkholderia sp. YI23
EKS70853     423 aavpaarparvsapdapsdRATDKTATPSLAKSA---PIGYAFAAS-DPSYVFFRTI 475 Burkholderia sp. SJ98
ADU34778     344 ddvgsvdssvirtrgftlaRPTASGAVVVPGRRTa--GAVAGSGIK-DPSYVFFKEA 397 Variovorax paradoxus

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap