2PI8,2PIC,2AE0,2G5D,2G6G,2GAE,2PNW,2PJJ,3CZB,3CZB


Conserved Protein Domain Family
mlta_B

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cd14668: mlta_B 
Click on image for an interactive view with Cn3D
Domain B insert of mltA_like lytic transglycosylases
Escherichia coli MltA is a membrane-bound lytic transglycosylase comprised of two domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, which correspond to the 3D domain, named for 3 conserved aspartate residues. Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial lytic transglycosylases (LTs), which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond. Typically, peptidoglycan lytic transglycosylases (LT) are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, MltE is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane-bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and Family 4 of bacteriophage origin. While most of the LT family members are similar in structure and sequence with a lysozyme-like fold, Family 2 (including mltA) is distinct.
Statistics
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PSSM-Id: 270616
Aligned: 191 rows
Threshold Bit Score: 142.665
Created: 15-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:Ligand binding induces conformational change of the domains, facilitating tight binding of the oligosaccharide by both domains.
  • Structure:2PI8: Escherichia coli Mlta binds chitohexaose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
2PI8_A    106 IQARHTRQGEFQYPIYRXPPKRg----------------------rLSSRAEIYAGals-------dkYILAYSnSLXDN 156 Escherichia coli K12
BAC90843  111 YRASRKPTATYRYPLYKTPGDLvtdgvrglg------qrtaagvrpYPTRAQIEKQnll-------agRELIWLaDPLER 177 Gloeobacter violaceus
BAD79313  212 YPASLTRTETYRYPLYRRPADFdrw------------------aqpHLTRRQIEGEdgllgdrsplagTELVWLsDRLAA 273 Synechococcus elon...
ABC78297  191 FEGSTDPAGRFKYPLYSQPDDLvkspdgvtlg-----rrtvngivpYPQRAEIESSgml-------kgREIMWLdDPFEA 258 Syntrophus aciditr...
CAJ70755  146 YQGSLTADSEFKYPLYKKPADFrk---------------------pYFKRKEIQENnll-------kgNEIVYLkSKLDA 197 Candidatus Kueneni...
ADH87039  135 LAGSLVPDQRFRYPLYSPPPDLarhegregr-------wqgeefvpYWTRAEIENQnll-------agHELVYLdDPLAA 200 Desulfurivibrio al...
ADW16670  128 FAGSLSRHPPYLYPLYREPDDLlvreqagqrnv--lgrkengrivpYWSRREIEQAnll-------rgMEMVWLkDPFDA 198 Desulfobulbus prop...
EKD38620  142 FAGSLTRQPPFLTPLYTPPKSLvvmrgnegeqdrvgrydgnnrlidYWSRAEIETKgvl-------agNELVFLkDPFDA 214 uncultured bacterium
AFY44357  163 YQASRSPTDEFRYPVYRLPPDInsw------------------tqpHPTRLELEGAdglqgsqgklrgLELFWFrDRLEP 224 Nostoc sp. PCC 7107
AFY96543  196 YTASRQQTAEFKYPLYKLPASFssw------------------kdpQPDRLMLEGAdglqgskselagNEIFWMrDRFEA 257 Chamaesiphon minutus
Feature 1         ####              ###      # # #             # #                            
2PI8_A    157 FIXDVQGSGYIDFGdgSPLNFFSYAGKNGHAYRSIGKVLIDRGevkkedXSXQAIRHWGETHseAEVRELLEQNPSFVFF 236 Escherichia coli K12
BAC90843  178 FLVHVQGSAKLVLTd-GATRSVGFAAKTDRPYQSIGKALVADGkireedLTLQAVKAYFRAHp-EELESYLHKNESYVFF 255 Gloeobacter violaceus
BAD79313  274 FLVHVQGSARLQLTn-GREFTVGYAGATQHPYRSIGQELVQDGvftaeaLTLGKLINWFAANp-DRLSDYLPRNDRFVFF 351 Synechococcus elon...
ABC78297  259 YIAHVQGSARIRQPd-GSFVGIGYAANNGHVYVSVAQKLVDDGkisrdqMNLSSMIAYFKAHp-EKVAEYTGINPRFVFF 336 Syntrophus aciditr...
CAJ70755  198 YLIHVQGSAQIDLIs-GNKLYIGYAADSGHEYTSIGQQLILDGkipeeeLTLSELISYFDRHp-DELDFYINKNDRFIFF 275 Candidatus Kueneni...
ADH87039  201 FIIHVQGSGRVRLPd-GTVRPVQYAARSGREYRSIGRLLVEEGrltrkeADLPGIKSYLRQHp-EQLRRVLHHNESYIFF 278 Desulfurivibrio al...
ADW16670  199 FMLHVQGSGIIRLVd-GSLRGVHYARSNGREYRSIGKYLVDTGrmrladVTMDSIRSYIDQHp-DERDLILRQNDSFIFF 276 Desulfobulbus prop...
EKD38620  215 FLLHVQGSGRIRFAd-NSIRSVRFAGSNGLQYKSVGKLLVDEKkmaledVTIPAIRAYLSQNp-EERQRILHHNPRFIFF 292 uncultured bacterium
AFY44357  225 YMMQIQGSARLQLTd-GTKTTIGYAGNTAYNYKSIGRELANDGklplqgMTMPIILNYFQQHp-PELNIYIPRDPSFVFF 302 Nostoc sp. PCC 7107
AFY96543  258 VLVQIQGSAELNLTd-GTKTTVGYAGGTSFAYTSIGKELAKDGkvtpsqLTLPGIIRYFQENp-QELDVYIPRWKRFVFM 335 Chamaesiphon minutus
Feature 1     #  
2PI8_A    237 KPQ 239 Escherichia coli K12
BAC90843  256 RWT 258 Gloeobacter violaceus
BAD79313  352 KPT 354 Synechococcus elongatus
ABC78297  337 RIT 339 Syntrophus aciditrophicus
CAJ70755  276 EVV 278 Candidatus Kuenenia stuttgartiensis
ADH87039  279 RWG 281 Desulfurivibrio alkaliphilus
ADW16670  277 HWR 279 Desulfobulbus propionicus
EKD38620  293 HWG 295 uncultured bacterium
AFY44357  303 QEN 305 Nostoc sp. PCC 7107
AFY96543  336 KET 338 Chamaesiphon minutus

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