Conserved Protein Domain Family
CBM6-CBM35-CBM36_like_2

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cd14488: CBM6-CBM35-CBM36_like_2 
uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily
Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules.
Statistics
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PSSM-Id: 271154
Aligned: 23 rows
Threshold Bit Score: 132.041
Created: 8-Jul-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
metal binding
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[DEQN] x [DN]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #                                                                        
Q9AQS0        792 PSVIVDNAdsagvtRTGTWKTAstq------tdRYGANYLHDdn-aGKGTKSVTFTPNLPIAGSYEVYLMWPAhfNREDA 864  Bacillus sp. GL1
YP_003123939  498 NMLIVDNIaa---vATGSWTGStsa------pgYYSTNYMTDgntgVTGGKSIRFTPDLPVAGAYDVYMRWASgtNRASN 568  Chitinophaga ...
ADG67901      571 PGVVVDDAla---rTKGEWTASgsi------sgFVGSGYQTDgn-eQKGEKSALFELKIPKTGSYDIRMSWTPnaNRASN 640  Planctomyces ...
ADB16240      560 SGVVIDDEka---dKTGEWQQSnsi------agYVGGRYLHDgd-sLKGQLAAKFTLPLPKPGKYEVRIAYLAnpNRSKA 629  Pirellula sta...
NP_868015     473 EGITIDDVda---vRAGHWVEStyk------sgFVGKGYVHDen-rNKGEASIRFAAVLPNAGRYELRVHYNAsgNRASN 542  Rhodopirellul...
CBL44696      561 TAILVDNKsan-tsSKGIWLPSilr------agYWGTGYEVAy--pSNVERTFSWVAEAPRSGHYELVMRWPDfsGFASN 631  gamma proteob...
ADB29853     1987 HVSLVDNSdtgdveAAGTWPVAatg------tgFQGTNYRTHaa-aAGSTDKHTWKLNVPADGKYTVYVRYPSvaGASTA 2059 Kribbella fla...
YP_631031      87 QAGYSEDGdvfessAQPGWGTPptpmgnavepfSLGTTRVMAs--aRSATASATWTPEIPAEGSYHVYVSYAAdpTRAPD 164  Myxococcus xa...
ADG68166      622 EGVVIDNRda---kVSGNWTSGsg-------lnGYVGYEYLYa--sANSGAKVKYSWKTAEEGLISFRLIYGAheNRGKA 689  Planctomyces ...
O60950        424 NKIVMTSQdknctvTGAPWTLDtsi------qaYNNSFLYISg--gVTPTSTVTWSFTINVTGLYEVCVWFPNg-DLHTS 494  Dictyostelium...
Feature 1                                                                           #     
Q9AQS0        865 VQVDVGHASGt---TRTAVDQRs---GGGVWHSIGTYEFLa---gSGGSVTIRNDALgspdGYVVADAVKFV 927  Bacillus sp. GL1
YP_003123939  569 TPVDVHYDGGs---NSYLINQQi---DNGVWKYLGTYNFAa---gTTGNVLIRNDSAn---GYVIADAVKFV 628  Chitinophaga pinensis...
ADG67901      641 VPVVVEAGTLr---TETRVNQRna-aGKDGFHTLGRMTLNa---gQTVNVVISNDKTd---GHVIIDAVQAL 702  Planctomyces limnophi...
ADB16240      630 VPVMIESASGn---SATSIDQTktapIDKLWLSLGEFEGD-----KQIVVTIKNEGTt---GHVIVDAVQAL 690  Pirellula staleyi DSM...
NP_868015     543 LPVSVQLNDEt---HDLILDQTvp-pKTGTYSVLKEFDCDa---eTQALVTLSNRGTd---GYVIADAVQWV 604  Rhodopirellula baltic...
CBL44696      632 ASLKFKTVDQg--vVQLTLDQR----VGGEWVTLGEYFFEe----GENKITISNKGAd---GAVVADAIRLV 690  gamma proteobacterium...
ADB29853     2060 APYAVSTGAAgsapVAKPVNQTt---GGGTWVSLGEFTFAe---aTTGSVTLGPAAT----GTVAADAVKVV 2121 Kribbella flavida DSM...
YP_631031     165 AHYVVKHAGGe---SHFRVNQRr---HGGTWVLLGRFYFKagqhpDSGAVVALNDTAe--gGTLSLDAVRFG 228  Myxococcus xanthus DK...
ADG68166      690 VPVTIQIGNSt---KQVLVDMTkapaGKDGSHELGRFEVKk---gEEVFVEIGTENAg---GVVHADALQLV 752  Planctomyces limnophi...
O60950        495 VSYKVEPGDGm--iYYFPVDQVh---YGARWIRLDSFFIVa---gNQPIISLSNRGIdp-sKTVVADSVKLT 557  Dictyostelium discoid...

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