2AE0,2PI8


Conserved Protein Domain Family
mltA_B_like

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cd14472: mltA_B_like 
Click on image for an interactive view with Cn3D
Domain B insert of mltA_like lytic transglycosylases
Escherichia coli MltA is a membrane-bound lytic transglycosylase comprised of two domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, which correspond to the 3D domain, named for 3 conserved aspartate residues. Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial lytic transglycosylases (LTs), which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond. Typically, peptidoglycan lytic transglycosylases (LT) are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, MltE is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane-bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and Family 4 of bacteriophage origin. While most of the LT family members are similar in structure and sequence with a lysozyme-like fold, Family 2 (including mltA) is distinct.
Links
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Statistics
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PSSM-Id: 270615
Aligned: 3 rows
Threshold Bit Score: 191.413
Created: 2-Mar-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:Ligand binding induces conformational change of the domains, facilitating tight binding of the oligosaccharide by both domains.
  • Structure:2PI8: Escherichia coli Mlta binds chitohexaose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                 ####
2AE0_X    106 IQARHTrQGEFQYPIYRMPPKRg-------------------rLSSRAEIYAGals--dkYILAYSnSLMDNFIMDVQGS 164 Escherichia coli
2PI8_A    106 IQARHTrQGEFQYPIYRXPPKRg-------------------rLSSRAEIYAGals--dkYILAYSnSLXDNFIXDVQGS 164 Escherichia coli K12
EMI72417  126 IEGRFYpEGDFIYPVLEIPSDLivkkdgngksvgkivnevfvpYETRAELSHFslwknrsKAIVYV-KIVDLHLAQLEGS 204 Leptospira noguchii
Feature 1                   ###      # #                                              #  
2AE0_X    165 GYIDFgdgSPLNFFSYAGKNGHAYRSIGKVLIDrgevkkedmSMQAIRHWGEThseAEVRELLEQNPSFVFFKPQ 239 Escherichia coli
2PI8_A    165 GYIDFgdgSPLNFFSYAGKNGHAYRSIGKVLIDrgevkkedxSXQAIRHWGEThseAEVRELLEQNPSFVFFKPQ 239 Escherichia coli K12
EMI72417  205 ALVKVp-dYTPFRITYSADNGKEYLSPAESLKGics---sliPSDLKNCILKYp--KEVEAAILKNPRYIFFKRE 273 Leptospira noguchii

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