1SDD


Conserved Protein Domain Family
CuRO_6_FV_like

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cd14455: CuRO_6_FV_like 
Click on image for an interactive view with Cn3D
The sixth cupredoxin domain of coagulation factor V and similar proteins
Factor V is an essential coagulation protein with both pro- and anti-coagulant functions. Aberrant expression of human factor V can lead to bleeding or thromboembolic disease, which may be life-threatening. Bovine factor Va serves as the cofactor in the prothrombinase complex that results in a 300,000-fold increase in the rate of thrombin generation. Factor V is synthesized as a single polypeptide with six cupredoxin domains and a domain structure of 1-2-3-4-B-5-6-C1-C2, where 1-6 are cupredoxin domains, B is a domain with no known structural homologs and is dispensible for coagulant activity, and C are domains distantly related to discoidin protein-fold family members. Factor V has little activity prior to proteolytic cleavage by thrombin or FXa upon secretion. The resulting Factor Va is a heterodimer consisting of a heavy chain (1-2-3-4) and a light chain (5-6-C1-C2). This model represents the cupredoxin domain 6 of unprocessed Factor V or the second cupredoxin domain of the light chain of coagulation factor Va, and similar proteins including pseutarin C non-catalytic subunit. Pseutarin C is a prothrombin activator from Pseudonaja textilis venom.
Statistics
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PSSM-Id: 259997
Aligned: 4 rows
Threshold Bit Score: 270.968
Created: 7-Jun-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1SSD: bovine factor Va light chain interacts with A1 domain of heavy chain, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                       #             ### 
1SDD_B        189 MREFVLLFMVFDEKKSWYYdkkptrswrr-----assevknsheFHAINGMiYNLPGLRMYEQEWVRLHLLNLGGSRDIH 263  cattle
NP_001007209 1629 RREFVLLFMTFDENKSWLYeenrqrierknrrvvmdpnfqdnlkFDAINGIiYSLKGLRMYTNQLAKWHLINMGSPKDLH 1708 zebrafish
XP_002935820 1449 VREFVLLFMTFEEEKSWYFeknkkktclevm--ekplqaakchtFHAINGKiYNLKGLVMYQNESVRWHMINMGGSKDLH 1526 western clawe...
AAO38805     1006 IREFVLFFMVFDEEKSWYFpksdkstcee-----kligvqslhtFPAINGIpYQLQGLTMYKDENVHWHLLNMGGPKDIH 1080 Pseudonaja te...
Feature 1         # # ## #       ### ## # #           ##  ###   ######          
1SDD_B        264 VVHFHGQTLLENgtqQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLI 325  cattle
NP_001007209 1709 SVHFHGQTFINKelkDHRQGVYPLLPGGFATLEMLPSKPGLWQLESEVGLSQQRGMQTLFLV 1770 zebrafish
XP_002935820 1527 VVHFHGQTVTERinrESQRGVYPLLPGSFATVEMKPSKPGHWLLDTEVAEYQQAGMQAMFHI 1588 western clawed frog
AAO38805     1081 VVNFHGQTFTEEgreDNQLGVLPLLPGTFASIKMKPSKIGTWLLETEVGENQERGMQALFTV 1142 Pseudonaja textilis

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