1SDD


Conserved Protein Domain Family
CuRO_2_FV_like

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cd14453: CuRO_2_FV_like 
Click on image for an interactive view with Cn3D
The second cupredoxin domain of coagulation factor V and similar proteins
Factor V is an essential coagulation protein with both pro- and anti-coagulant functions. Aberrant expression of human factor V can lead to bleeding or thromboembolic disease, which may be life-threatening. Bovine factor Va serves as the cofactor in the prothrombinase complex that results in a 300,000-fold increase in the rate of thrombin generation. Factor V is synthesized as a single polypeptide with six cupredoxin domains and a domain structure of 1-2-3-4-B-5-6-C1-C2, where 1-6 are cupredoxin domains, B is a domain with no known structural homologs and is dispensible for coagulant activity, and C are domains distantly related to discoidin protein-fold family members. Factor V has little activity prior to proteolytic cleavage by thrombin or FXa upon secretion. The resulting Factor Va is a heterodimer consisting of a heavy chain (1-2-3-4) and a light chain (5-6-C1-C2). This model represents the cupredoxin domain 2 of unprocessed Factor V or the heavy chain of Factor Va, and similar proteins including pseutarin C non-catalytic subunit. Pseutarin C is a prothrombin activator from Pseudonaja textilis venom.
Statistics
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PSSM-Id: 259995
Aligned: 5 rows
Threshold Bit Score: 234.752
Created: 7-Jun-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimerDomain 1
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1SSD; Bovine Factor Va A1 domain of heavy chain interacts with light chain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ####             #  
1SDD_A        180 EKQHVLMFAVFDESKSWnq------tsSLMYTVNGYVNgTMPDITVCAhDHISWHLIGMSSGPELFSIHFNGQVLEQNhH 253  cow
AAO38805      211 NREYVLMFSVFDESKNWyr------kpSLQYTINGFANgTLPDVQACAyDHISWHLIGMSSSPEIFSVHFNGQTLEQNhY 284  eastern brown...
NP_001007209  199 HQESVLLFGVFDENKSWystgdspqplNVKYTINGYTNgSVPDLDICAhSKVSWHLLGMSSEPELFSVHFNGQVLLHDgH 278  zebrafish
AAO33375      152 YHEYVFLFGVFNENESKfkqndpasvdHIKYTINGFTEgSLPDVSICTyAPVSLHLVGMSSDPEVFSVHINGQVLQQNgH 231  torafugu
XP_002935820  204 DKEYVLMFAVFDENKSWqnln--dkehSVMYSINGYVNgTIPDIYACAgDSVSWHLLGMSSEPEFFSIHFFGQTLEENqH 281  western clawe...
Feature 1                # ##                                  
1SDD_A        254 KISAITLVSATSTTANMTVSpEGRWTIASLIPRHFQAGMQAYIDI 298  cow
AAO38805      285 KVSTINLVGGASVTADMSVSrTGKWLISSLVAKHLQAGMYGYLNI 329  eastern brown snake
NP_001007209  279 KTSAVGIISGTATSASMTGVhPGRWLVSSHISKHLEAGLHGYLNI 323  zebrafish
AAO33375      232 KMSSVGLISGSSTTVSMVAVhTGRWLLSSQIMKHIQGKMYGFVNM 276  torafugu
XP_002935820  282 KVSVVGLVASSSTTANMTIYqTGKWLITSLVEKHFEAGMHGYIEV 326  western clawed frog

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