1SDD


Conserved Protein Domain Family
CuRO_5_FV_like

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cd14451: CuRO_5_FV_like 
Click on image for an interactive view with Cn3D
The fifth cupredoxin domain of coagulation factor V and similar proteins
Factor V is an essential coagulation protein with both pro- and anti-coagulant functions. Aberrant expression of human factor V can lead to bleeding or thromboembolic disease, which may be life-threatening. Bovine factor Va serves as the cofactor in the prothrombinase complex that results in a 300,000-fold increase in the rate of thrombin generation. Factor V is synthesized as a single polypeptide with six cupredoxin domains and a domain structure of 1-2-3-4-B-5-6-C1-C2, where 1-6 are cupredoxin domains, B is a domain with no known structural homologs and is dispensible for coagulant activity, and C are domains distantly related to discoidin protein-fold family members. Factor V has little activity prior to proteolytic cleavage by thrombin or FXa upon secretion. The resulting Factor Va is a heterodimer consisting of a heavy chain (1-2-3-4) and a light chain (5-6-C1-C2). This model represents the cupredoxin domain 5 of unprocessed Factor V or the first cupredoxin domain of the light chain of coagulation factor Va, and similar proteins including pseutarin C non-catalytic subunit. Pseutarin C is a prothrombin activator from Pseudonaja textilis venom.
Statistics
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PSSM-Id: 259993
Aligned: 5 rows
Threshold Bit Score: 351.835
Created: 5-Jun-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Domain 6
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:Domain 6 interface [polypeptide binding site]
Evidence:
  • Comment:Interface between cupredoxin domains 5 and 6 of unprocessed Factor V, which corresponds to cupredoxin domains 1 and 2 of the light chain.
  • Structure:1SDD: Bos taurus Factor Vai light chain interface between cupredoxin domains 1 and 2; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #  # ## ##                 ####                    ######    #         
1SDD_B          6 RKYYYIAAEEISWDYSKFVqsddvd----yvpedtVYKKVVFRKYLDstFTKLDPQGEyeEHLGILGPVIRAEVDDVIQV 81   cow
AAO33366      106 ERRYYIAAKEVCWNYAGLKkstmmyd---kickdgSTKKVIFQRYTDstFTTVQDEGEyeEHLGILGPVIRAEVNDVILV 182  chicken
NP_001007209 1447 TRTYFISVEEEEWDYAGYGqrrldkt--aqnerptVFRKVVFRRYLDstFSIRDIRGEmdEHLGILGPLIKAEVDQTVMV 1524 zebrafish
XP_002935820 1262 KRKYYITAEEEQWDYYNPAkssltkerpdsetrttQYTKVRFRQYLDssFSKPDVQGEyeEHLGILGPVIRAEVDDIIQI 1341 western clawe...
Q7SZN0        825 KRRYYIAAEEVLWDYSPIGksqvrs-----raaktTFKKAIFRSYLDdtFQTPSTGGEyeKHLGILGPIIRAEVDDVIEI 899  Pseudonaja te...
Feature 1               #  #    #                                               ########        ##
1SDD_B         82 RFKNLASRPYSLHAHGLSYEkssegktyeddspewfkedNAIQPNKTYTYVWHATTRSGPEnPGSACRAWAYYSAVNpEK 161  cow
AAO33366      183 HFKNLASRPYSLHAHGLFYEkssegsiyddessdwfkedDKVQPNSSYIYVWYANRRSGPLqPGAACRSWVYYSDVNlEK 262  chicken
NP_001007209 1525 FFRNRASRPYSLHANGVKYLkqmeglsyddespywykqdDAVPPNGTFTYMWTINPKSGPQnNESDCRTWTYYSAVNpER 1604 zebrafish
XP_002935820 1342 TFKNLASRPYSLHAHGVSYEkssegfqyddgtpdwlkkdDAVKPGETYTYVWYATHQSAPEnEGSDCRTWIYYSGVNpEK 1421 western clawe...
Q7SZN0        900 QFKNLASRPYSLHAHGLLYEkssegrsyddkspelfkkdDAIMPNGTYTYVWQVPPRSGPTdNTEKCKSWAYYSGVNpEK 979  Pseudonaja te...
Feature 1          ###  # # #     
1SDD_B        162 DIHSGLIGPLLICRKG 177  cow
AAO33366      263 DTHSGLIGPILICEKG 278  chicken
NP_001007209 1605 DINSGLIGPLLVCRKG 1620 zebrafish
XP_002935820 1422 DIHSGLLGPLLICKSG 1437 western clawed frog
Q7SZN0        980 DIHSGLIGPILICQKG 995  Pseudonaja textilis

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