3IHP,2DAK


Conserved Protein Domain Family
UBA2_UBP5

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cd14386: UBA2_UBP5 
Click on image for an interactive view with Cn3D
UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
UBP5, also called deubiquitinating enzyme 5, Isopeptidase T (IsoT), ubiquitin thioesterase 5, or ubiquitin-specific-processing protease 5, is a deubiquitinating enzyme largely responsible for the disassembly of the majority of unanchored polyubiquitin in the cell. Zinc is required for its catalytic activity. UBP5 contains four ubiquitin (Ub)-binding sites including an N-terminal zinc finger (ZnF) domain, a catalytic ubiquitin-specific processing protease (UBP) domain (catalytic C-box and H-box), and two ubiquitin-associated (UBA) domains. ZnF domain binds the proximal ubiquitin. UBP domain forms the active site. UBA domains are involved in binding linear or K48-linked polyubiquitin. This model corresponds to the UBA2 domain.
Statistics
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PSSM-Id: 270569
Aligned: 26 rows
Threshold Bit Score: 63.121
Created: 27-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptide
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:3IHP; Homo sapiens USP5 in complex with ubiquitin, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 #    ##  ##  ##  #
3IHP_A       719 PPEDCVTTIVSMGFSRDQALKALRATnNSLERAVDWIFSHIDD 761  human
EHJ70014      92 VDEASLEQVTGMGFTRTQAIKALTATdGDVGRALDWIFSHAEQ 134  monarch butterfly
EKX47335     155 VPAHKIEALEGMGFERSKAIAALQRTeGDVDQAADILLGGGSA 197  Guillardia theta CCMP2712
CCD59659     745 IDENAVEMMLAMGFSRQQSIVALQHKnGNLEQAADWALSSPDE 787  Schistosoma mansoni
GAA55525     467 PDEESIAMMTSMGFTREQAIKALRHTgNDLPAAADWAFSNPDL 509  Clonorchis sinensis
EKC19946     672 PSEGGVAMVMAMGFSRDQAVKALKNTdNNVERAVDWIFSHTDE 714  Pacific oyster
XP_002601257 623 LSEEALTILEAMGFTRGQAIRGLKATdNNLERAADWLFSHSDE 665  Florida lancelet
NP_647773    696 ANPESLAMLMSMGFDERQAVAALKATdGNVERATDWIFSHADS 738  fruit fly
CBY18438     711 FSPEIIAMVTSMGFTDKQSKKALSATdGNVERAIDWIFSHLDE 753  Oikopleura dioica
XP_001748436 800 PPAEAVGMLEAMGFSTEQARRALRETdNNLERAADWAFNHPDE 842  Monosiga brevicollis MX1

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