2W2A,2WSJ,4ALB,3NAD,3NX1


Conserved Protein Domain Family
PAD

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cd14241: PAD 
Click on image for an interactive view with Cn3D
Phenolic Acid Decarboxylase
This family of bacterial and fungal phenolic acid decarboxylases catalyzes the non-oxidative decarboxylation of phenolic acids to produce 4-vinyl derivates. Phenolic acid, like ferulic, p-coumaric, and caffeic acids, are important lignin-related aromatic acids and are natural constituents of plant cell walls. They act as crosslinkers between lignin polymers and hemicellulose/cellulose in plants. Their degradation is important from a biotechnological viewpoint.
Statistics
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PSSM-Id: 260131
Aligned: 25 rows
Threshold Bit Score: 198.646
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:4ALB, Bacillus subtilis BsPAD with bound p-coumaric acid, contacts 4A
  • Structure:2WSJ: Lactobacillus plantarum p-coumaric acid decarboxylase binds two isopropanol molecules in the active site; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #             #           # #    #  #                       #   #   #  
2W2A_A        27 FLGTHFIYTYDn--------GWEYEWYAKNdhTVDYRIHGGmVAGRWVtdQKADIVMlt-egIYKISWTEpTGTDVALDF 97  Lactobacillus p...
4ALB_A         4 FIGSHMIYTYEn--------GWEAEIYIKNdhTIDYRIHSGmVAGRWVrdQEVNIVKlt-egVYKVSWTEpTGTDVSLNF 74  Bacillus subtilis
ZP_18905823   13 LVGKHLVYTYDn--------GWQYEIYVKNknTFAYRIHSGiVAGRWVtdQQADIVKia-ehTFKISWDEpTGTIVCVTI 83  Leptolyngbya sp...
YP_004362451  18 FVGMHFIYTYAn--------GWRYEWYARNsnTCDYRIHQGlVGGRWVtnQPMVLVQla-pgMYKADWHEpTGTCVSLYF 88  Burkholderia gl...
ZP_09011526   12 FIGKRFVFTYNs--------GWSYELYIKNtgRVDYRVHHGvIGDRWIknQHVYMALis-kdICKLSWTErTGTNVSIII 82  Commensalibacte...
YP_002363215  16 FVGKHINYTYKn--------GWQYEVYFKNerMLDYRVRGGgVGGRWV--NIVRLAEg----VVKVSWAEpRGTCVSVAY 81  Methylocella si...
XP_004204656  23 LKNKHFQYTYDn--------GWKYEFHVPNdqRIVYSIHGGpMAGRHNf-QTCYYQRvr-enLWQANWLEeTGTVVSLIL 92  Millerozyma far...
ZP_06729382  114 FVGTHFVYTYGn--------GWKYEWYARNdnTCDYRIHRGlVGGRWVtnQKINAVQfa-pgIYKVDWHEpTGTCVSLLF 184 Xanthomonas fus...
EKG14540     750 LKDLHMVYDYNakdeqgnpeKWRYEIWFQMedRVVYKIHGGpMAGRANf-QTCSFQCirpgeLWQCNWLEeTGTIVSLVF 828 Macrophomina ph...
EGZ23139      22 IRDLHLLYDYDaegadgkpeKWRYEMWFFSenRIVYSIHGGpMAGRLNy-QTVAFQCirpgeLWQCNWLEeTGTIVSLVY 100 Phytophthora sojae
Feature 1                  # #                                                                 
2W2A_A        98 MpnEKKLHGTIFFPKWVe---eHPEITVTyqn--ehIDLMEQSREKYaTYPKLVVPEFANITYMGDAGqnNEDVISEA 170 Lactobacillus pla...
4ALB_A        75 MpnEKRMHGIIFFPKWVh---eHPEITVCyqn--dhIDLMKESREKYeTYPKYVVPEFAEITFLKNEGvdNEEVISKA 147 Bacillus subtilis
ZP_18905823   84 NlvQKELHGAIFLPQWIe---qDPQKTVCyqn--ehLERMYHYRNQGpTYPKMIICEFAKIFFLENCGpdRDDVINCP 156 Leptolyngbya sp. ...
YP_004362451  89 DiaRRLIHGTIFFPQWIagegqHPEKTICyqn--dfIPDMHRFRDEGpAYPYVIIGEFAKITFMEQRGpdNDEVINAA 164 Burkholderia glad...
ZP_09011526   83 NlvDHCYQGTLFFPHWIi---kHPEKAAHain--dtIPLIELYREAGpTYPIEIVDEFARITFIEDCGvdDETIIACP 155 Commensalibacter ...
YP_002363215  82 NlvEHRAHGATFFPHWIe---lEPKKIIGfhn--dkIDLMRQYRDGGpTYPILVVDEFADITFVEDCCrdDERGFAYA 154 Methylocella silv...
XP_004204656  93 DidNRRITTFMAFSQGHw---eHPNDAHGdkr--vdLDRWRGLSKIGiSTNRYLITEQASIDEIFEGRg-DLPEISLD 164 Millerozyma farin...
ZP_06729382  185 DlkRKLVHGTIFFPQWIagegqHPEKTICyqn--dfIEDMHKFRDEGpAYPYVVVPEFASVTYMKNEGpdNDAVINMP 260 Xanthomonas fusca...
EKG14540     829 DipNKRVTTLIAFSKGHw---eHAEEAHGdkrnpkdLERWRGLARIGcHTDRKMLPEQADILEVFHGKg-DLEPIEHD 902 Macrophomina phas...
EGZ23139     101 DikNQKITTMIGFSKGHw---eHPEDAHGdkrnpedYARWRKLAELGnNRDRLILSEQANILETFKGAg-NLVPIAPD 174 Phytophthora sojae

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