1WR6,1YD8


Conserved Protein Domain Family
GAT_GGA

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cd14230: GAT_GGA 
Click on image for an interactive view with Cn3D
canonical GAT domain found in metazoan and fungal ADP-ribosylation factor (Arf)-binding proteins (GGAs)
GGAs, also called Golgi-localized gamma-ear-containing Arf-binding proteins, belong to a family of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins that regulate clathrin-mediated trafficking of cargo proteins from the trans-Golgi network (TGN) to endosomes. GGAs also play important roles in ubiquitin-dependent sorting of cargo proteins both in biosynthetic and endocytic pathways. The family includes three GGAs (GGA1, GGA2, and GGA3) identified in mammals and two GGAs (Gga1p and Gga2p) identified in the budding yeast Saccharomyces cerevisiae. All these GGAs have a multidomain structure consisting of: an N-terminal VHS (Vps27/Hrs/Stam) domain that binds acidic-cluster dileucine (DxxLL)-type sorting signals (where x is any amino acid) found in the cytoplasmic tail of TGN sorting receptors; a GAT (GGA and TOM) domain that interacts with class I GTP-bound form of Arf proteins, Rabaptin-5, ubiquitin, and the tumor susceptibility gene 101 product (TSG101); a largely unstructured hinge region that contains clathrin-binding motifs; and a C-terminal GAE (gamma-adaptin ear homology) domain that binds accessory proteins. In contrast to other GGAs-like proteins, members of this family contain a GAT N-terminal region, a helix-loop-helix in the complex with Arf1-GTP.
Statistics
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PSSM-Id: 410578
Aligned: 5 rows
Threshold Bit Score: 99.1578
Created: 11-Sep-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ubiquitin
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ubiquitin binding site [polypeptide binding site]
Evidence:
  • Structure:1WR6; Homo sapiens ADP-ribosylation factor-binding protein GGA3 binds ubiquitin through its GAT domain, contacts at 4A.
  • Structure:1YD8: Human GGA3 GAT domain binds ubiquitin; contacts at 4A.
  • Comment:GGAs play important roles in ubiquitin-dependent sorting of cargo proteins both in biosynthetic and endocytic pathways.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  ##  #  ##           ## ##  ##  #                                          
1WR6_A         9 TLEEVNNNVRLLSEXLLHysqedssDGDRELXKELFDQCENKRRTLFKLASETedndNSLGDILQASDNLSRVINSYKTI 88  human
1YD8_G        14 TLEEVNNNVRLLSEMLLHysqedssDGDRELMKELFDQCENKRRTLFKLASETedndNSLGDILQASDNLSRVINSYKTI 93  human
P38817       243 ELNKLKRKADLLNEMLESpd---sqNWDNETTQELHSALKVAQPKFQKIIEEEqeddALVQDLLKFNDTVNQLLEKFNLL 319 Saccharomyces c...
CBY20277     209 LLAEAKEKYTLMDEMISAg------ASAKSSMASVYRDLESMRPQLFRLASEAnennDELMGVLRLTDEVNRVINVVKDK 282 Oikopleura dioica
XP_014149350  19 DLDTAQNNIDLFDEMLDSynpsdgpLEDNDIMTELYQFLNKMRPRLKKLCQDMde-dEDVDGVIPVFRRVDNTLDKYEDI 97  Sphaeroforma ar...

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