2V62,2JII,3OP5


Conserved Protein Domain Family
STKc_VRK

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cd14015: STKc_VRK 
Click on image for an interactive view with Cn3D
Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. VRKs were initially discovered due to its similarity to vaccinia virus B1R STK, which is important for viral replication. They play important roles in cell signaling, nuclear envelope dynamics, apoptosis, and stress responses. Vertebrates contain three VRK proteins (VRK1, VRK2, and VRK3) while invertebrates, specifically fruit flies and nematodes, seem to carry only a single ortholog. Mutations of VRK in Drosophila and Caenorhabditis elegans showed varying phenotypes ranging from embryonic lethality to mitotic and meiotic defects resulting in sterility. In vertebrates, VRK1 is implicated in cell cycle progression and proliferation, nuclear envelope assembly, and chromatin condensation. VRK2 is involved in modulating JNK signaling. VRK3 is an inactive pseudokinase that inhibits ERK signaling. The VRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270917
Aligned: 16 rows
Threshold Bit Score: 457.898
Created: 17-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #####   #                    # #                              
2V62_A     28 GKVLDDme-gNQWVLGKkIGSGGFGLIYLAFPtnk-----peKDARHVVKVEYQEnGPLFSELKFYQRVAKKdcikKWIE 101 human
2JII_A     33 GTVLTDks-gRQWKLKSfQTRDNQGILYEAAPtstltcdsgpQKQKFSLKLDAKD-GRLFNEQNFFQRAAKPlqvnKWKK 110 human
3OP5_A     26 GEIITDma-aAAWKVGLpIGQGGFGCIYLADMnsse---svgSDAPCVVKVEPSDnGPLFTELKFYQRAAKPeqiqKWIR 101 human
EEC20395   32 GEVLTDvt-kRQWRLGKaVGLGGFGEIYLASDevas---aagPDASYVIKIEPHSnGPLFTEMNFYHRVGKAeqikAWVQ 107 black-legged tick
EFX79445   29 GEIVRDiq-kRQWRLGKsIGVGGFGEIYAASDnidk--qvnaADAQYVIKIEPHSnGPLFVEMNFYIRVAKAdfinEWIT 105 common water flea
EDO31526   20 GTELTDlt-kQKWTLGKlIGWGGFGALYLGTVvsgs--neadENAEYVIKVEPHAnGPLFTELAFYQRVAKPesikSWMK 96  starlet sea anemone
CAC21380   10 GEVLTDtt-kTKWKIGKiVGKGGFGFIYFAVKdse-----knKDFTHVVKVEPKSnGPLFVEQIFYQRIGKKeiinNWML 83  Yaba-like disease ...
ELT97354   35 GEILTDvtkkGHWKLIKtIGQGGFGLIYLAKAeh------etSKLEYVVKLEPYGnGPLFCELNFFRRAGKPemisAFMK 108 Capitella sp. I Gr...
EEN66567   25 GEVLTDsm-kRQWKVGGaVGQGGFGLLYAASPngpg---tvgPNAEYVIKIEPHDnGPLFSEINFYLRTAKQdmirDWMK 100 Florida lancelet
EGI66074   28 GEILTDit-qNKWRLGNtIGYGGFGDIYLASNditl---pvgQDAKYVVKIEPHNnGPLFVEMNFYIRAARKhmikSWCE 103 Panamanian leafcut...
Feature 1              #                   ####  #                                        # # 
2V62_A    102 RKQLDYLGIPLFYGSGLTefkgRSYRFMVMERLGiDLQKISGqn--gtFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKA 179 human
2JII_A    111 LYSTPLLAIPTCMGFGVHq---DKYRFLVLPSLGrSLQSALDvspkhvLSERSVLQVACRLLDALEFLHENEYVHGNVTA 187 human
3OP5_A    102 TRKLKYLGVPKYWGSGLHdkngKSYRFMIMDRFGsDLQKIYEana-krFSRKTVLQLSLRILDILEYIHEHEYVHGDIKA 180 human
EEC20395  108 KHKLDYLGMPQFFGTGSHehkgVRYRFMVMERFGeDFQKVLDrns-ktLPLKTVFEVGLRVIDVLEYVHSFGYIHADVKA 186 black-legged tick
EFX79445  106 SNKLKFLGMPRFIGSGSHeykgEKYRFMVMQRFGiDVQKLFDanq-rrFPLNTILNLSLRIIDVLEYIHAKQYVHADIKG 184 common water flea
EDO31526   97 AHSLKHLGVPCYLGSGSVehknAKMRFMVMERYHqDVDNIFLkhg-rkFEISTVLTLGLRMLDVLEYIHANEYAHADIKG 175 starlet sea anemone
CAC21380   84 TNNVSYLGIPKCYGFGFHksdkNDYRFIIIDRLGcDLQRIIQand-nkLPKKTVLKIGAIILVILKFIHDNGYVHSDIKA 162 Yaba-like disease ...
ELT97354  109 AHKMKHLGVPRYVASGTHq--dNKYRFMVMPKFGtDLQVLFEssg-kvFSEGTVYNLGVQMIDALEYIHKNEFVHADIKA 185 Capitella sp. I Gr...
EEN66567  101 AKKMKHLGVPRYIGSGSHeg-kMRLRFMVMERFGeNLHKMFEsag-kvFTRRDVAMLAIRLLHTLEYLHEHQFVHADIKG 178 Florida lancelet
EGI66074  104 SQGKKRIGVPTYEGSGSHfyggHRYRFLVIPRYGvDIGKLFLshr-kkLPTKLVNTLAVQMLDALEYIHSKGYAHADIKG 182 Panamanian leafcut...
Feature 1     ## #                 #                                                          
2V62_A    180 ANLLLGyk-----npDQVYLADYGLSYRYCPNGnhk-qyqENPRKGHNGTIEFTSLDAHKGvalSRRSDVEILGYCMLRW 253 human
2JII_A    188 ENIFVDpe-----dqSQVTLAGYGFAFRYCPSGkhv-ayvEGSRSPHEGDLEFISMDLHKGcgpSRRSDLQSLGYCMLKW 261 human
3OP5_A    181 SNLLLNyk-----npDQVYLVDYGLAYRYCPEGvhk-ayaADPKRCHDGTIEFTSIDAHNGvapSRRGDLEILGYCMIQW 254 human
EEC20395  187 SNLLLGfgk---aneNKVFLVDFGLASRYIQDGkhk-eckEDLRFAHNGTIEFTSRDAHIGa-tSRRDDLEILGYNMLQW 261 black-legged tick
EFX79445  185 SNLLLGfgk---ggeKQVWLVDFGLACRYTVDGvhk-eyrPDLRKAHNGTIEFTSRDAHIGa-nGRRGDFEILGYNMLQW 259 common water flea
EDO31526  176 SNLMTGfgk---gksDQVYLLDYGLTFRFCPNGehk-eykEDPKRKHDGTVEFTSRDAHRGvapSRRGDLEILGYVMLQW 251 starlet sea anemone
CAC21380  163 SNIALDkn-----dkNKLYLIDYGLAFRFMVNDihv-efkKDPKRMHNGTIEFTSIDAHCGaypSRRGDLEILGYCMIKW 236 Yaba-like disease ...
ELT97354  186 SNILLDg-------dNKAFLVDYGLASRFLLNDkhr-dykEDPRKAHDGTIEFTSRDAHRGvapSRRGDFEILAYCLLQW 257 Capitella sp. I Gr...
EEN66567  179 SNLLLGftk---dtqDQVYLVDYGLAYRYLPDSghr-dykEDPRKAHDGTPEFTSSDAHKGvpaARRGDIEILGYVLLQW 254 Florida lancelet
EGI66074  183 PNILLSygneigkekSMAYLVDYGLAYRFRTGTgehkpfvHDERRAHEGTLEFTSRDAHHGt-hSRRGDLETLGYNIIQW 261 Panamanian leafcut...
Feature 1                                                                                     
2V62_A    254 LcGKLPWEQnl------kDPVAVQTAKTNLLDElpqsvlk-wapsgssCCEIAQFLVCa-----HSLAYDEKPNYqALKK 321 human
2JII_A    262 LyGFLPWTNcl------pNTEDIMKQKQKFVDKpgpfvgp-cghwirpSETLQKYLKVv-----MALTYEEKPPYaMLRN 329 human
3OP5_A    255 LtGHLPWEDnl------kDPKYVRDSKIRYRENiaslmdk-cfpaanaPGEIAKYMETv-----KLLDYTEKPLYeNLRD 322 human
EEC20395  262 LcGALPWEDnl------kDVNYVSQRKSWFMDNipllmsk-cfpnkdvPCGITEYLQLv-----AELEFEAAPDYnRLRA 329 black-legged tick
EFX79445  260 McGRLPWESkl------tDPEFVASQKNKYMSNipaliqe-cfpaknaPAVMVKFLEMv-----ANLKFEEKPNYdKFRQ 327 common water flea
EDO31526  252 LcGRLPWEDkl------nDKEYVKDKKMTYMDDipkllkd-cglttdsTGMLKEFLQYv-----ATLEYDQAPDYsRLRK 319 starlet sea anemone
CAC21380  237 MsGKLPWEDdl------kNKEYVKMSKIKYMNDvnllmke-cfndskeFLELEKYMNAv-----KLLNYDSLPNYtELIS 304 Yaba-like disease ...
ELT97354  258 RcSRLPWEDkl------sNKDYVAQQKIKYLDDlpslfkk-cfpggdiPVVLKQFFQYv-----VKMEYNDTPDYnFCRR 325 Capitella sp. I Gr...
EEN66567  255 LcGQLPWEDnl------aNCDYLRDQKIKYLKNipsllka-cfpegdcPDEMRKYLDYtsglvlNSSRYQERPDYnYLRG 327 Florida lancelet
EGI66074  262 LcGKLPWEKdsdeigftmNPEEIHQQKEILLSDlplfmdkcfpdkkkpPAAIMKYMKCi-----TELEFETKPNYsYLRN 336 Panamanian leafcut...
Feature 1       
2V62_A    322 IL 323 human
2JII_A    330 NL 331 human
3OP5_A    323 IL 324 human
EEC20395  330 IL 331 black-legged tick
EFX79445  328 LL 329 common water flea
EDO31526  320 MF 321 starlet sea anemone
CAC21380  305 IL 306 Yaba-like disease virus
ELT97354  326 LF 327 Capitella sp. I Grassle & Grassle, 1976
EEN66567  328 LF 329 Florida lancelet
EGI66074  337 LF 338 Panamanian leafcutter ant

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