Conserved Protein Domain Family
UbiB

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cd13972: UbiB 
Ubiquinone biosynthetic protein UbiB
UbiB is the prokaryotic homolog of yeast Abc1p and human ADCK3 (aarF domain containing kinase 3). It is required for the biosynthesis of Coenzyme Q (ubiquinone or Q), which is an essential lipid component in respiratory electron and proton transport. It is required in the first monooxygenase step in Q biosynthesis. Mutant strains with disrupted ubiB genes lack Q and accumulate octaprenylphenol, a Q biosynthetic intermediate.
Statistics
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PSSM-Id: 270874
Aligned: 26 rows
Threshold Bit Score: 341.874
Created: 26-Apr-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ATP
Feature 1:putative ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               ####      # #         # 
A1AI24       92 LLQDKVAPFDGKLAKQQIea-----amGGLPVEAWFDDfeiKPLASASIAQVHTARLKSNg-----KEVVIKViRPDILP 161 Escherichia coli...
YP_867385    80 RLQDDVPPFDLATVRQSIee------dLKRPLHELFRSfdeKPVASASIAQVHHAFTHDG------DEVAVKVlRPDVAA 147 Magnetococcus sp...
ZP_01451853  93 KLQDDVPPEPFARVRRVIersfkqpltGEGGLFAEFHE---IPVAAASIAQVHFAELRDG------RQVAVKVrRDHISR 163 Mariprofundus fe...
YP_693968    84 RLQDQVAPFDGEQARALVea------sLHQPLDEVFRDfdsTPIAAASVAQVHAATLHNG------QQVVAKVlRPTIRP 151 Alcanivorax bork...
ABD36905     91 HLQDRVKPFSVDTVIEQIeqst-kkggLGQTINQLFARfdgTPLAAASIAQVHTARLHDG------REVVVKVvRPTIRE 163 Moraxella osloensis
EAV46939     85 KLQDQVPPFSFSIAKNILek------aYRKPLKQQFIDfqeTPVASASVAQVHFAKLYTG------QEVAVKIlRPNIKK 152 Methylophilales ...
EGM27529     82 KLQDEVPPFEGAEARRLIea------aYGHSLDKFFEYfetEPMAAASIAQVHRARLHARageaqgREVVVKVlRPDVHE 155 Salinisphaera sh...
ACH82735     95 KLQDAVPPFPSNVARQIIea------aLGKPLDAIFSRfddQPAAAASIAQVHFGQLLDG------REVAIKVrRPGLQW 162 Acidithiobacillu...
AGF48789     88 MLYDKVSPFPSNEAISCIes------sFGKSIDNLFLNfnrIPAAAASVAQVHFAITLDG------REVAVKIlRPGILE 155 Candidatus Kinet...
EJP71408     66 SLTDSCKPFNVSQLKKIIek------eLNDKIENIFEYfddEPLAAASLAQVHSARLKTG------QDVVIKVlRPNIER 133 SAR86 cluster ba...
Feature 1       #                                                                 #             
A1AI24      162 VIKADLKLIYRLaRWVPRLLPDgrrlrPTEVVREYEKTLIDELNllrESANAIQLRRNf----EDSPMLYIPEvyPDYCS 237 Escherichia coli...
YP_867385   148 RVETDIAMLMTMaSLVEELMPEwrrlkPRGVVKEFAQTIRNEMDflvEASRAQKLGENf----KDDVGMMIPQvyWPLTS 223 Magnetococcus sp...
ZP_01451853 164 TIESDLAILRLLaALFDRYFPEyrrlkAPQVIEEFATSIRGELNlraEAAHASRFAENl----VDVEGVRVPEvlWDYTH 239 Mariprofundus fe...
YP_693968   152 VVERDLKVMAFGaRWLERLWRDaryfrPVRVVQDYREILLGELDlaaEARNSETMRRHf----LFSPLLHIPAihLELSS 227 Alcanivorax bork...
ABD36905    164 QIIEDFELLRDLaGWASARIEAaravhIIDIVEDYRQVLLNELDltlEAANTTQMRNNf----LGSSMMYVPE--VYQAS 237 Moraxella osloensis
EAV46939    153 QIERDIKLLAWLaYILESLWNDgrrlkPREVVSEFARHTKSELNlllEAGHCSHLGENf----KDKKLLIVPEvyWDHCY 228 Methylophilales ...
EGM27529    156 RIERDVAVLYRLaGLAARFHPEakrlrPVEIVAEYDRIITDELDlmrEGANASQLGRNw----AGSDLIVHPEihFDYST 231 Salinisphaera sh...
ACH82735    163 IIDQDLAILALLaDLAERYSQEgrrlrVRAVVAEYAKIIRGELDllrEAANASQLRRNf---aAEPELLYVPEiyWDYCA 239 Acidithiobacillu...
AGF48789    156 VIERDLSLLRFLsKIINFFWSEsnrlkLIEVVNEFDKYLHKEIDlrcEAANCSQIRSNfnnddNRKGMLIAPNiiWELTN 235 Candidatus Kinet...
EJP71408    134 KVKKNLRLLKSAaKIFSYVYKEsyrlkPNEVVKDYESTILKELDlklEASNTNLTRKNf----LDSEELYIPEvyWDLTT 209 SAR86 cluster ba...
Feature 1            ####                                          #   ## #                 ##  
A1AI24      238 EGMMVMERIYGIpvsd-vatlEKNGTNMKLLAERGVQVFFTQVFrDSFFHADMHPGNIFVSyeh----peNPKYIGIDCG 312 Escherichia coli...
YP_867385   224 SRVFTMAWIEGVsidelprerVAGRPDPRVVAERLLSSFFKQVFhDGYFHADQHPGNILVRe--------DGVVALIDFG 295 Magnetococcus sp...
ZP_01451853 240 TEVLTTERIIGVpide-karlEAAGHDCMKLCERVATLFFHTVFiDGYFHADMHPGNIFVDe--------SGEIVLIDFG 310 Mariprofundus fe...
YP_693968   228 PTVIIMDRIHGIpvnd-ieriKAAGIDPKVLAERGVEIFFAQVFrFNFFHADMHPGNIFVNpeh----peSPQYMAIDAA 302 Alcanivorax bork...
ABD36905    238 KNIMIMERIIGVpisq-tqvfDALGYDRAALAAKGLTIFFTQVFrDNFFHADMHPGNVFVEtlpadtpnpNPRYIALDCS 316 Moraxella osloensis
EAV46939    229 DNVMVMERMNGIpisn-ikelNKRNIDIPTLARNGVEIFFTQVFrDGFFHADMHPGNIQVRa--------DGKYIALDFG 299 Methylophilales ...
EGM27529    232 ETVLVMEHMYGVpidd-vdtlKAAGVDFKVLAERGVEIFFKQVFrDNFFHADMHPGNILVQpev----phRPRYVGLDFG 306 Salinisphaera sh...
ACH82735    240 SPVLVMERIYGIpigq-realHDAGIDFDQLSRRAAEIFFRQVFrDAYFHADMHPGNIFIDp-------kNGRFIAVDFG 311 Acidithiobacillu...
AGF48789    236 SLVLTMERMYGIpinq-idnlRSVGLNTSDIASKGIHIFLLQVFeDGFFHADMHPGNIYVSynr----stLGSYIALDFG 310 Candidatus Kinet...
EJP71408    210 SNVMVLEKIDGIpctd-idqiESYGIDKKTLAENGVMIFLNQVFrDNFFHADMHPGNIFVSken----peKPGYIAVDCA 284 SAR86 cluster ba...
Feature 1                                       
A1AI24      313 IVGSLNKEDKrylaENFIAFFNRDYRKVAELH 344 Escherichia coli APEC O1
YP_867385   296 IVSHVSEQTRqflaEMVQGFITRDYKKVAQVH 327 Magnetococcus sp. MC-1
ZP_01451853 311 IVGRLDMKTRrylaGMLLAFLKEDYHRSAQVH 342 Mariprofundus ferrooxydans PV-1
YP_693968   303 IAGRLSKDDLnilgRMVLAVMREDYSALVDAV 334 Alcanivorax borkumensis SK2
ABD36905    317 IVGELSKADQmivaRLLLSVMNNNFTGLVDII 348 Moraxella osloensis
EAV46939    300 IMGTLSEEDKkylaRNFLCFFKRDYRGVAEAH 331 Methylophilales bacterium HTCC2181
EGM27529    307 IVGSLTADDQrylaENFLAFFNQDYRKIAELH 338 Salinisphaera shabanensis E1L3A
ACH82735    312 IMGSLDDASQhylaENMVAFFRRDYRRVAEAH 343 Acidithiobacillus ferrooxidans ATCC 23270
AGF48789    311 IVGCLSDSDKnylaQNLVAFFHKDYKSVAKLH 342 Candidatus Kinetoplastibacterium galatii TCC219
EJP71408    285 ITGSLSNDERytlaRMLQAVLKQNYKSLANLF 316 SAR86 cluster bacterium SAR86A

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