Conserved Protein Domain Family
PT_UbiA_chlorophyll

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cd13958: PT_UbiA_chlorophyll 
Bacteriochlorophyll/chlorophyll synthetase
Chlorophyll synthase catalyzes the last step of chlorophyll (Chl) biosynthesis, the addition of the tetraprenyl (phytyl or geranylgeranyl) side chain. In plant chloroplast, the chlorophyll synthase is located in thylakoid membrane and has been shown to also have a regulatory or channeling function. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.
Statistics
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PSSM-Id: 260121
Aligned: 30 rows
Threshold Bit Score: 306.848
Created: 26-Feb-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1: putative active site [active site], 8 residue positions
Conserved feature residue pattern:N D D D N D [aS] DClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on homology modeling using structures of trans prenyltransferases that are helical enzymes containing two D-rich motifs in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                             ##  #   #  
XP_001752661  55 RLQLTKPVTWapLIWGVLCGAAASGnfqwtled--------------vaksltcmLMSGPLLTGYTQTINDWYDREIDaI 120 Physcomitrella ...
YP_001995500  23 HIELLDPVTWisAVQGLLCGAIASGemqlsfeh--------------vgllvaliMLYGPLGTGFSQSINDYYDRFLDkV 88  Chloroherpeton ...
NP_662868     42 HLELLDPVTWisVFPCLAGGVMASGamqptvhd--------------ylllaalfLLYGPLGTGFSQSVNDYYDLELDrV 107 Chlorobium tepi...
YP_001633781  17 HIELADPVTWisPVLVCFCGALASGyergfdwtrp----------dhwwlmllgaLMTGPLGTGFSQSINDYFDRDLDaI 86  Chloroflexus au...
EKX35257     103 RVQLMKPVTWvpLIWGVACGAAASGkyhsiwdgasfse-----wstdfvkalvcmVLAGPLLTGYTQTINDWYDREIDaI 177 Guillardia thet...
EED93011      92 RLQLTKPVTWipLVWGVMCGAAASGnyhwiwnpfdpndrnvmlgledmakgfvamILAGPFLTGYTQTINDWYDRDIDaI 171 Thalassiosira p...
XP_001701588  79 RVQLTKPVTWipLIWGVACGAAASGhyqwnnptq-------------iaqlltcmMMSGPFLTGYTQTINDWYDREIDaI 145 Chlamydomonas r...
CCO16234     130 HIQLTKPGTWvpLIWGVMCGAAASGhyewnldn--------------igkallcmTMSGPFLTGYTQTINDWYDREIDaI 195 Bathycoccus pra...
BAM83208     109 RLQLMKPITWipLVWGVGCGAAASGqyqwndpqd-------------iaklllcmILSGPVLAGFTQTLNDWFDREIDaV 175 Cyanidioschyzon...
NP_488520     54 RLQLMKPITWipLIWGVVCGAASSGnytwslen--------------vlkaatcmLLSGPLLTGYTQTLNDFYDREIDaI 119 Nostoc sp. PCC ...
Feature 1                                                                                        
XP_001752661 121 NEPYRPIPSGAISEpeVIAQIWILLLGg--LGVAYGldrwaghdFPIILCTAIGGsFLSYIYSAPPLKLKqsGWIGNYAL 198 Physcomitrella ...
YP_001995500  89 NEPTRPIPSGRISEkeAVWNWVIVGILsvsLGVWLGlqfe-gerRFVIIASIIVGlIMGYIYSAPPFKLKrnVLTSAPAV 167 Chloroherpeton ...
NP_662868    108 NEPTRPIPSGRLSEkeAIWNWSIVLVIa-vALSSWIgtsiggqrGMIFVGSLLAGlVIGYLYSAPPFKLKknIFFSAPAV 186 Chlorobium tepi...
YP_001633781  87 NDPQRPIPAGIISLneARWNWIVLGAAt--LLVSLVf------gNPLIVLFAVVGiVLSVIYSMPPIKLKkhFWLGPPAV 158 Chloroflexus au...
EKX35257     178 NEPNRPIPSGAISEneVIAQIWALLLGg--LGLAYGldvwagheWPSVLALAIGGsFISYIYSAPPLKLKqsGWIGNYAL 255 Guillardia thet...
EED93011     172 NEPYRPIPSGAISEgqVIFQIWFLLLGg--LGIAYGldvwaghdFPTVLALSIFGsWVSYIYSAPPLKLKqnGWAGNYAL 249 Thalassiosira p...
XP_001701588 146 NEPYRPIPSGRISErdVIVQIWVLLLGg--IGLAYTldqwaghtTPVMLQLTIFGsFISYIYSAPPLKLKqsGWAGNYAL 223 Chlamydomonas r...
CCO16234     196 NEPYRPIPSGAISEtaVKAQIAVLLLGg--LACGWQldqwcehdFPVIFLLTVFGsWVSYIYSAPPLKLKaeGWKGCYAL 273 Bathycoccus pra...
BAM83208     176 NEPYRPIPSGAISEgeVVAQIWALLFAg--LGLAYGldlwqghqFPRVLAVALFGtFLAYIYSAPPLKLKknGWLGNYAL 253 Cyanidioschyzon...
NP_488520    120 NEPYRPIPSGAISVpqVVTQIVLLFIAg--IAVAFTldlwagheFPNVTVLALFGsFIAFIYSAPPLKLKqnGWLGNYAL 197 Nostoc sp. PCC ...
Feature 1                                                  ##  #   #                             
XP_001752661 199 GSSYISLPWWAGQALFGt--LSWDVVILTLLYSTAGLGIAIVNDFKSIEGDRqmGLQSLPVAFGIDTAKyicAASIDVTQ 276 Physcomitrella ...
YP_001995500 168 GISYSLITWLSGNALYAd--IRIEVVYMALINALMTIGLIFLNDFKSVEGDRagGLKSLPVMIGPRNTYvvsFFFVDLPF 245 Chloroherpeton ...
NP_662868    187 GFSYGFITYLSANALFSd--IRPEVLWLAGLNFFMAVALIVMNDFKSQEGDAkeGMKSLTVMIGAKNTFlvaFIIIDLVF 264 Chlorobium tepi...
YP_001633781 159 GLGYVSMSWMAGHLIFAp--LTWQSVVVALINGGLAAGLLFLNDIKSVEGDRklGLQSLTVAIGVKRTLivaYVTINSFE 236 Chloroflexus au...
EKX35257     256 GSSYIALPWWCGQVFFNqasFNPTVAILTILYSWAGLGIAIVNDFKSIEGDRelGLQSLPVQFGVDTAKwicVGSIDFTQ 335 Guillardia thet...
EED93011     250 GCSYISLPWWCGQAVFGe-lDRPVYFVLPILYSIAGLGIAIVNDFKSIEGDRelGLQSLPVAFGVDGAKyicAGSVTLTQ 328 Thalassiosira p...
XP_001701588 224 GSSYIALPWWAGQALFGt--LTLDVMALTIAYSLAGLGIAIVNDFKSIEGDRqmGLQSLPVAFGVDTAKwicVSTIDVTQ 301 Chlamydomonas r...
CCO16234     274 GSSYIALPWWAGMATFGq--LTPDVMVLTVLYSIAGLGIAIVNDFKSIEGDRalGLQSLPVAFGVEKAKwitVGTIDATQ 351 Bathycoccus pra...
BAM83208     254 GASYISLPWWAGQSLFSdnpLDWKIIALTLLYSFAGLGIAVINDFKSIEGDRrlGLASLPVMYGVDTAKwlsVGLIDIFQ 333 Cyanidioschyzon...
NP_488520    198 GASYIALPWWAGHALFGe--LNWKIAVLTLIYSLAGLGIAIVNDFKSVEGDRqlGLQSLPVMFGINTAAwicVVMIDVFQ 275 Nostoc sp. PCC ...
Feature 1                                                                                        
XP_001752661 277 LAVAAYILYQGkt--yYGLGLLAl--IIPQIILQFKYLLvdpvkyd----------------------vkyqasAQPFFV 330 Physcomitrella ...
YP_001995500 246 IWFIYLMHQWGftfmfYFSAVSLviiFVMQMVLYFDPKDgakaldasvkgmgfesfvgksdvkehksflrylivNNGLYL 325 Chloroherpeton ...
NP_662868    265 AVFAWRSYMWGfttlmYFIIAGLvlnIIIQIPIYRDPKSgitlvqhavddgfgnai-gksevqehnaflrfqvvNNILFL 343 Chlorobium tepi...
YP_001633781 237 AMLMILALIWGqy--wVAAFMFLa--LVAPIYNQIKLYQeptqqny----------------------vryllaSNPFVA 290 Chloroflexus au...
EKX35257     336 LGVAGYLASIGet--nYALVLLGl--ILPQIYLQFTTFLkdpiand----------------------vkyqaaAQPFLV 389 Guillardia thet...
EED93011     329 LGVAAYLQSIGet--tYAAILLGl--LLPQIYFQATLLLpdpvand----------------------vkyqasSQPFFV 382 Thalassiosira p...
XP_001701588 302 LGVAAYLAWGLhe-elYGAVLLAl--ILPQIYFQYKYFLpdpiand----------------------vkyqasAQPFLV 356 Chlamydomonas r...
CCO16234     352 LFVAFYLRGIGed--fYSNVLFCl--IAPQIFAQFKFFLpdpiknd----------------------vkyqaaAQPFLV 405 Bathycoccus pra...
BAM83208     334 ALVAAYLALVGet--gYALALVAm--ILPQVYLQWKIFLpdpmqnd----------------------vkyqgaAQPFLV 387 Cyanidioschyzon...
NP_488520    276 GLIAAYLVTIHen--lYAAILVLl--IIPQITFQDMYFLrdplknd----------------------vkyqasAQPFLV 329 Nostoc sp. PCC ...
Feature 1               
XP_001752661 331 FGLLLTA 337 Physcomitrella patens subsp. patens
YP_001995500 326 INVFAAS 332 Chloroherpeton thalassium ATCC 35110
NP_662868    344 TNQMFAA 350 Chlorobium tepidum TLS
YP_001633781 291 LIQIISG 297 Chloroflexus aurantiacus J-10-fl
EKX35257     390 LGILTTA 396 Guillardia theta CCMP2712
EED93011     383 FGILATA 389 Thalassiosira pseudonana CCMP1335
XP_001701588 357 FGLLTAG 363 Chlamydomonas reinhardtii
CCO16234     406 FGLLATG 412 Bathycoccus prasinos
BAM83208     388 FGILITA 394 Cyanidioschyzon merolae strain 10D
NP_488520    330 LGMLVAG 336 Nostoc sp. PCC 7120

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