Conserved Protein Domain Family
PT_UbiA

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cd13956: PT_UbiA 
UbiA family of prenyltransferases (PTases)
Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.
Statistics
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PSSM-Id: 260119
Aligned: 64 rows
Threshold Bit Score: 78.9291
Created: 19-Feb-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1: putative active site [active site], 4 residue positions
Conserved feature residue pattern:d d d dClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on homology modeling using structures of trans prenyltransferases that are helical enzymes containing two D-rich motifs in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                           #   #         
Q8VWJ1        101 YRFSRPHTVigtvLSILSVSFLAVEKvsdispll------ftgileaVVAALMMNIYIv-gLNQLSDVEIDkvnkPYLPL 173  thale cress
ZP_11361206     8 FKISRFRFWi--yTGGTYVVGYALGFsvfgdflr------peyylylFYFFFPANIFIy-gVNDYWDEDTDkl-nPKKDE 77   Methanobacter...
YP_007157965   13 IKLVRAKEWw--sYKLAPVLGTAYATaailnisli---slwstllflLFALVIGASYAs-lINNICDQEEDq--iSGKAN 84   Anabaena cyli...
ACL44610       13 VILIRAGQWw--sVKGAPALGTVYATafvlngfsli--kawkwlvflLVTVAIVAIYAe-iLNDFTDQEQDt--lSGKTN 85   Cyanothece sp...
ACU04224        4 FKVIRSAEWw--aHKLPPLLAIGYATvlmsavply---rvslwlvflLASLVVGAIYVs-vINDITDLEEDl--aSGKPN 75   Pedobacter he...
EHP54878        4 AEITRSSEWw--eYKLSPLLAIGYATilsagkeig---dywtrllliLLSLAAGAAYVs-iINDITDLKDDr--mAGKKN 75   Niabella soli...
YP_007068232  421 FKIIRGGNWw--lYKIPPLLAIAYAEillmylpvi---qsiltvlalLFSISSLAAYGh-iVNDILDIEVDq--rVGKNN 492  Calothrix sp....
YP_007100747  254 SESTRIKNWw--nYKIPPLLGIVYALlllsdytia---qattifaviISTSIGAAGYGh-fINDICDIETDq--kANKPN 325  Oscillatoria ...
EHO39799       17 FFVLRPMLFy--pGWSTLLAGYLIVFkhrwaltpsewseldfgllavLFVSFALAMGGsflLNQLADVESDlknnKLFLI 94   Caldithrix ab...
YP_001995543   11 VFLLRPTLMf--pVWITMMCGFAVRTepdfftn-------splpyfaLLLFSLSAGTTy-iFNQIADRESDfhnnKLFLL 80   Chloroherpeto...
Feature 1                                                                                         
Q8VWJ1        174 ASGEYSVn---tGIAIVASFsiMSFWLGw------iVGSWPLFWALfv--sfMLGTAYSINLPLlrwkrfalvaamcila 242  thale cress
ZP_11361206    78 KEHRVSVlerkrLLNVIFLVtsFSLILMvf-----qDNVERIIFTGf----lFLSYFYSAKPLRfkd-----------kp 137  Methanobacter...
YP_007157965   85 YFIGRSKf---lIALAMIGCivLGLIVSg-------LLIQVPLALCfyignwLLFTVYSVPPIRl--------------k 140  Anabaena cyli...
ACL44610       86 RMVGRSTv----TQTFLLAIc-TSLLFLpv-----lVLIHHSLLLGiylstcAVFTVYSLPPLRlkec--------gfwg 147  Cyanothece sp...
ACU04224       76 RIQQIPEk---lRWTIPVACifFGTIFGyfl--ypdLLSCLLYLLSw-----IVFSLYSIRPVRlknr--------gilg 137  Pedobacter he...
EHP54878       76 RMQNLPAy---yRWLLPVAGl-LSGLFFeyvlyypdTRSMIFYAVPw-----VLFSLYSFPPFRfkkr--------gipg 138  Niabella soli...
YP_007068232  493 SMAQFSSw---qHLLLCILFaaTGFVLPil----mnFGTWAIILLGin---yLLPTLYSAPPLRlkek--------giwg 554  Calothrix sp....
YP_007100747  326 AAANLQPw---qRLLLCLLFlsIGFAAPll-----tHLGIIPLALLta--nyLLPTLYSVPPLRlker--------gtwg 387  Oscillatoria ...
EHO39799       95 SKGHIPRk---nAVVEVIVLlaLSLVLAl-------AVDWRIFATIlif-ivITGYLYNFKPFRfkdkpwwslwanmamg 163  Caldithrix ab...
YP_001995543   81 SHHHISLt---aAWIEAVLLtlFSLVLStsi---smAFFWVQVAVV------VAGICYSFFGFMshpal------gllin 142  Chloroherpeto...
Feature 1                                                                              #   #      
Q8VWJ1        243 VRAIIVQIAFYLhiqthvf------------grpilfTRPLIFATAFms-------fFSVVIALFKDIPDIEGDkifgiR 303  thale cress
ZP_11361206   138 FLDFASNYLYILpgifayy------------lasntiPPIIYMVGAFl---------HISAMHIFSAIPDIKYDrkagiN 196  Methanobacter...
YP_007157965  141 NRGIWGGLAIAMgeslvpqilsifliahntdkplsatWLTMIAIWAFa---------LGLRSILWHQILDFENDhlagiN 211  Anabaena cyli...
ACL44610      148 TLADALGSHVLPqifavlmv---------anaadhviPLAWLICIFFws------laTGLRGIFWHQLLDLENDqkagvN 212  Cyanothece sp...
ACU04224      138 VFADGCGSHLFPsllmvssvsy------ithqemnwvWFASVGVWAFc---------YGLRGILWHQFADRVNDikvnlN 202  Pedobacter he...
EHP54878      139 ILCDAGGSHVFTgllmisst----------cfamherVPPLWMFAIGvws-----fcYGLRGILWHQYTDRVNDqraglQ 203  Niabella soli...
YP_007068232  555 VVSDAAGAHAIPtlffaatflhl----sttpqpesliLTITAKVWSFc---------AGLRGILLHQLWDRENDlksgvK 621  Calothrix sp....
YP_007100747  388 ILSDAAGAHLVPtlfvaa-------------tvlsqtPDPPRNALIFtgiaaahaffVGLRGILLHQLWDRTNDlnsgtA 454  Oscillatoria ...
EHO39799      164 FLAFCLGWLAVHqq---------------------fsCVLLLDALPYl--------lFNTALYFYTTLPDVEGDraagkK 214  Caldithrix ab...
YP_001995543  143 FLGGIFSFLGGYfaipd---------------fqsdlFDQLMLSLPYg--------fAWGAVYLLVSIPDVAGDkkfgkN 199  Chloroherpeto...
Feature 1                                                                                         
Q8VWJ1        304 SFSVTLGQKRVFwtc------vtLLQMAYAVAILVGAtspf----------iwskVISVVg----------hVILATTLW 357  thale cress
ZP_11361206   197 TTPVFIGVNPALw---------lCLIFWMGLSFIVIYltdf----------fpisFLVFFy----------pLFPLLLLI 247  Methanobacter...
YP_007157965  212 TFAVNTSKQTLQrlg------kwVVFPIEFLSLLVILllsn----------nvfgWIFIGi-----------YFFTEFLR 264  Anabaena cyli...
ACL44610      213 TFAVSHAAAIKRftrwv-lfpfeILSLVGILLLSSSLl----------------gWLLLAl-----------HSITEWLR 264  Cyanothece sp...
ACU04224      203 TYASKIEPQDFKk---------qSMLLITLELIALSIll--------------tqLALLAp----------yIALLLYLV 249  Pedobacter he...
EHP54878      204 TVAVRIPPHKFKrie-----aglFVTELLATLGIFLYlg---------------nPWVIGvy--------lcYLLLCFLR 255  Niabella soli...
YP_007068232  622 TLVTNLDVEKVRfwisfiifpveILLLSLLVLVISQFa-----------------PLLLVffilyvllktinIKLALANA 684  Calothrix sp....
YP_007100747  455 TFVTQQPPKTVHrwidrlvfpveILLLSGVALLLCQStpa-------------ltIFFAV------------YLLLTTVN 509  Oscillatoria ...
EHO39799      215 TLAVQFGIKTIVy---------vAFLFYLAGLISAVVlqd------------rlaLIMVApa---------lPFFVWTLR 264  Caldithrix ab...
YP_001995543  200 TIAVVHGEKRAMf---------dAFLLVLIAALLGALtqnfyvlitvglsglistPYFFKvfadgdlskistPVKLSMLL 270  Chloroherpeto...
Feature 1                                                    
Q8VWJ1        358 ARAKSvdlssktei-----------tscymfiwkLFYAEYLLL 389  thale cress
ZP_11361206   248 KRDWSiddlywyl--------------pyvntmlGGLLFISLV 276  Methanobacterium sp. Maddingley MBC34
YP_007157965  265 YYFWKlsiviieptnk-------hrlflfeyydvFYPLSFLAL 300  Anabaena cylindrica PCC 7122
ACL44610      265 HYFWSinlvivepinn-------hrfllheyyefFYPLTFLAL 300  Cyanothece sp. PCC 7425
ACU04224      250 LLYLRytayknqivliikpnsgpfqilmadyyqmFFPISLLVF 292  Pedobacter heparinus DSM 2366
EHP54878      256 YRFLKlapvvvlskpdt-----piqilqldyfqcLFPLTLLVC 293  Niabella soli DSM 19437
YP_007068232  685 FEPAPtrkanva---------------lhdfyevWLPLALITL 712  Calothrix sp. PCC 7507
YP_007100747  510 IKTAPhpftpsppkgq--------niiphdlyevWLPLALSIT 544  Oscillatoria sp. PCC 6304
EHO39799      265 LPEVSatira--------------------tkfsILFFALAVC 287  Caldithrix abyssi DSM 13497
YP_001995543  271 LSFALffsyp--------------------mllaLLAATVLLS 293  Chloroherpeton thalassium ATCC 35110

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