2XU9


Conserved Protein Domain Family
CuRO_3_Tth-MCO_like

?
cd13900: CuRO_3_Tth-MCO_like 
Click on image for an interactive view with Cn3D
The third cupredoxin domain of the bacterial laccases similar to Tth-MCO from Thermus Thermophilus
The subfamily of bacterial laccases includes Tth-MCO and similar proteins. Tth-MCO is a hyperthermophilic multicopper oxidase (MCO) from thermus thermophilus HB27. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety aromatic - notably phenolic and inorganic substances coupled to the reduction of molecular oxygen to water. It has been implicated in a wide spectrum of biological activities and, in particular, plays a key role in morphogenesis, development and lignin metabolism in fungi and plants. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 3 of 3-domain MCOs contains the Type 1 (T1) copper binding site and part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.
Statistics
?
PSSM-Id: 259967
Aligned: 49 rows
Threshold Bit Score: 139.688
Created: 29-Nov-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H XClick to see conserved feature residue pattern help
Evidence:
  • Structure:2XU9; Thermus thermophilus HB27 Laccase binds to copper at T1 copper center; contacts at 3.5A
  • Comment:Type 1 (T1) copper sites are characterized by their conserved H...C...H...M copper ligands.
  • Comment:Some members bind copper at the T1 site with three amino acid residues (HCH), instead of four (HCHM).

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2XU9_A       320 VVTRRLVLTEdm-----------------------maARFFINGQVFdh---rRVDLKGQAQTVEVWEVENQGd-----M 368 Thermus thermop...
YP_002372505 490 QNSQPVNFEAvpr----------------------npGQFTIDNRKYge---pGAKFTVALNSQEEWLLDSLSn-----V 539 Cyanothece sp. ...
YP_005610045 552 SQQQQAAFAIn-------------------------fPAFTVNNASYdp---dVVNFTREVNTTDDWLLSAQG------E 597 Bradyrhizobium ...
YP_556543    529 ADLRKLDTHVfaphqpiegpvnvkaptvfdvtvsggaPQFTINGETYdp---sRVDYTATLGSTDEWRLTAGPa-----G 600 Burkholderia xe...
YP_004493843 409 ARTREVRYTVerep-------------------dnefDTFGINGLPYsp---eREPYQPRLGTAEEWTIINATdpklarH 466 Mycobacterium s...
EJL05037     525 DDIQKADFFIgnppfppsppan---apqkpgdpwtgpFGFYINYKSYdp---dRIDFTRQVNTTDDWVLTSQG------E 592 Pseudomonas flu...
YP_001531368 616 PHWKSLNFAFvaepd-----------------pdgtpANFQINGQSFdadlsdDPQLMLPASDWTAWELYSSS------D 672 Dinoroseobacter...
XP_002738121 270 AGQYRVDFGQlrg---------------------petCNFGINGMLFrg--pdVYDHIMTLDTIEEWIIKDTGp-----E 321 Saccoglossus ko...
YP_004694006 495 LPTQGAVFGFtnsef-----------------apidgGASVINARVFnp---iRSQRDLALKQVDLWSAQSAV------G 548 Nitrosomonas sp...
EAQ66955     382 TFGRRLEFGLsga---------------------aegNKYTINGEPFs----cLNPWQIPLGAVEEWEVYNHTa-----E 431 Marinomonas sp....
Feature 1         #                                                                              
2XU9_A       369 DHPFHLHVHPFQVLSVggr--------------------------------pfpYRAWKDVVNLKA----------GEVA 406 Thermus thermop...
YP_002372505 540 THPFHIHVNPFQVVAIgsknqqgvi---------------------twndipseDRIWQDTVAVDP----------NIPL 588 Cyanothece sp. ...
YP_005610045 598 PHIFHIHVNPFQVIDVtttntngqqisiynpdgtckpdivyadkqqlanqycgmWHTFRDTIIVEN----------NYQI 667 Bradyrhizobium ...
YP_556543    601 GHVFHIHVNPFEIVDIqnpggvsifdtngac--------taqeiatgdleyctlHGVFLDTLYLKP----------GYTV 662 Burkholderia xe...
YP_004493843 467 AHVLHIHVNPFKITKInge--------------------------------tldKPLWRDTWVLTGg--------tGDSF 506 Mycobacterium s...
EJL05037     593 PHIFHIHVNPFQVMDVlyakpgekpksifgpnge---clvpadelglqnqycgmWHEFKDTVFVQN----------DYQV 659 Pseudomonas flu...
YP_001531368 673 LHMFHIHINSFMVLGRyrvsapddpe-------------------aitsfipylLPIWRDTVYFDAgndatatpltGRRV 733 Dinoroseobacter...
XP_002738121 322 SHPFHLHVNHFQVISTtyqddp--------------------------nqivfeIGEWRDTLAARD----------VTTI 365 Saccoglossus ko...
YP_004694006 549 THMFHIHINSFQLVSRgqv--------------------------------kysFPIWRDTLLVETqsdkegnaeiGDIV 596 Nitrosomonas sp...
EAQ66955     432 SHPFHIHVNPFQMISGgd----------------------------------vePGTWLDTVNLAP----------FSRI 467 Marinomonas sp....
Feature 1                        #    #    #      
2XU9_A       407 RLLVPLREk-GRTVFHCHIVEHEDRGMMGVLEV 438 Thermus thermophilus HB27
YP_002372505 589 KIQHRFDDynGTFVLHCHILFHEDQGMMYDVEV 621 Cyanothece sp. PCC 8801
YP_005610045 668 RVRTRYDRyiGEYVLHCHILDHEDAGMMANIAI 700 Bradyrhizobium japonicum USDA 6
YP_556543    663 VMRTRYEDftGEFVMHCHILDHEDSGMMQNVEI 695 Burkholderia xenovorans LB400
YP_004493843 507 TFETHFEDftGQFVQHCHILSHEDLGMMEAVEV 539 Mycobacterium sp. DQS39A1
EJL05037     660 LVRTHYDRyiGEFVIHCHILDHEDGGMMTNIQI 692 Pseudomonas fluorescens Q2-87
YP_001531368 734 AALSYQVDftGEFVFHCHSLYHEDNGMMFTVEI 766 Dinoroseobacter shibae DFL 12
XP_002738121 366 RFRTDTFP--GVVVLHCHYLRHEDLGMMQVTYI 396 Saccoglossus kowalevskii
YP_004694006 597 QFLQKPLDytGSLVMHCHNVFHEDNGMMELVKI 629 Nitrosomonas sp. Is79A3
EAQ66955     468 RFRTRFTDftGTFVFHCHNLTHEDLGMMQAIEV 500 Marinomonas sp. MED121

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap