Conserved Protein Domain Family
CuRO_3_CopA

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cd13896: CuRO_3_CopA 
The third cupredoxin domain of CopA copper resistance protein family
CopA is a multicopper oxidase (MCO) related to laccase and L-ascorbate oxidase, both copper-containing enzymes. It is part of the copper-regulatory cue operon, which employs a cytosolic metalloregulatory protein CueR that induces expression of CopA and CueO under copper stress conditions. CopA is a copper efflux P-type ATPase that is located in the inner cell membrane and is is involved in copper resistance in bacteria. CopA mutant causes a loss of function including copper tolerance and oxidase activity and copA transcription is inducible in the presence of copper. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 3 of 3-domain MCOs contains the Type 1 (T1) copper binding site and part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.
Statistics
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PSSM-Id: 259963
Aligned: 42 rows
Threshold Bit Score: 147.403
Created: 20-Nov-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1: Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H XClick to see conserved feature residue pattern help
Evidence:
  • Comment:Type 1 (T1) copper sites are characterized by their conserved H...C...H...M copper ligands.
  • Citation:PMID 2716059
  • Comment:Some members bind copper at the T1 site with three amino acid residues (HCH), instead of four (HCHM).

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                              #                         
Q47452       489 GRTIELHLTGHMe---kFAWSFNGIKFSDAapv--llkYGERLRITLINDTMMTHPIHLHGMWSDLEDeng-nfmVRKHT 562 Escherichia coli
YP_001821266 558 TREIVMHVTGNMe---rFVWGFDGKKFSEAepv--rlrFGERVRITFINDTMMEHPLHLHGMFMELENgag-glpPLKHT 631 Opitutus terrae...
YP_002753795 561 TREIELHLTGNMn---rYIWGFNGEKFSQAepi--vlrLGERVRFVLINDTMMEHPIHLHGLWSELENghg-pyrPFKDT 634 Acidobacterium ...
YP_005447284 495 TREMTLHLTGNMg---rYIWGIDGKKWSQSemi--rfvYGERLRINYVNDTMMPHPMHLHGMWSDLHNgqpydkiPRKHT 569 Phycisphaera mi...
NP_419780    448 GRTIEIHLTGNMe---rFMWAFDGEAFGPLkkpi-afqRDERARVVLINDTMMAHPIHLHGHFFELVNgqe--rqPLKHT 521 Caulobacter cre...
YP_002128721 443 TREVTIRLTGSMn---rYYWSIDGRKWPDAppl--kvrFGERVRVRIVNDTMMDHPMHLHGMWMDLVNgdg-slgARKHT 516 Phenylobacteriu...
YP_003473958 440 DRVLEVHLTGNMekfiwRMWVYDGKSWSWDpthfikvrRGELVRIVFVNHTMMDHPVHLHGMFMYLRNgyd-eyaPAKDT 518 Thermocrinis al...
YP_006853583 488 ERELLVRLTGDMt---rYFWSMNDKKLSNAkpl--kigLGERVRIKMVNETMMEHPMHLHGVFMELVNgng-vfgPRKHT 561 Acidovorax sp. ...
YP_002729847 444 TRQIDIHLVGNMeryiwKMYSYDGKRWSSEfhqlikarYNERIRIVFINHTMMDHPIHLHGMWMYLQNnsg-eysPRKHT 522 Persephonella m...
YP_001931859 441 DRIIEVHLVGNMerfiwKMYTYDGKNLTSKfeepidlkYGELVRFAIINHTMMNHPIHLHGMWLYLDNggd-kynPRKHT 519 Sulfurihydrogen...
Feature 1                                #    #    #      
Q47452       563 IDVPPgTKRSYRVTADALGRWAYHCHLLYHMEmGMFREVRV 603 Escherichia coli
YP_001821266 632 VTVKPaEKMSVLVTADAPGHWAFHCHLQYHMEaGMFRVFEV 672 Opitutus terrae PB90-1
YP_002753795 635 IIVKPaERVSYLVSADTPGRWAYHCHLLYHMEaGMFRTVVV 675 Acidobacterium capsulatum ATCC 51196
YP_005447284 570 TIVQPaELLSIDVTADAPGHWAFHCHLLYHMEvGMFRTVAV 610 Phycisphaera mikrensis NBRC 102666
NP_419780    522 VNVAPgGKVAFDLTADEPGDWAFHCHMLLHMHaGMFNVVTV 562 Caulobacter crescentus CB15
YP_002128721 517 VVVGPnQTVTADVTVDALKTWAFHCHILFHAAtGMMTTLQV 557 Phenylobacterium zucineum HLK1
YP_003473958 519 INIKSgEKVCVDVLADAPGYWAFHCHLLYHMHtGMMRVLEV 559 Thermocrinis albus DSM 14484
YP_006853583 562 IIVPPaQTVELDVTYEDEGTWAFHCHLFYHAAtGMMRLVEV 602 Acidovorax sp. KKS102
YP_002729847 523 VNIKPaEKLCVEIDNDALGNWAFHCHIMYHMHtGMFRVLQV 563 Persephonella marina EX-H1
YP_001931859 520 INVKPgEVVFADVIADAVGNWAFHCHVLYHMDsGMFRVVRV 560 Sulfurihydrogenibium sp. YO3AOP1

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