3ABG


Conserved Protein Domain Family
CuRO_3_BOD

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cd13889: CuRO_3_BOD 
Click on image for an interactive view with Cn3D
The third cupredoxin domain of Bilirubin oxidase (BOD)
Bilirubin oxidase (BOD) catalyzes the oxidation of bilirubin to biliverdin and the four-electron reduction of molecular oxygen to water. It is used in diagnosing jaundice through the determination of bilirubin in serum. BOD is a member of the multicopper oxidase (MCO) family that also includes laccase, ascorbate oxidase and ceruloplasmin. MCOs are capable of oxidizing a vast range of substrates, varying from aromatic compounds to inorganic compounds such as metals. Although the members of this family have diverse functions, majority of them have three cupredoxin domain repeats. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 3 of 3-domain MCOs contains the Type 1 (T1) copper binding site and part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.
Statistics
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PSSM-Id: 259956
Aligned: 21 rows
Threshold Bit Score: 174.809
Created: 17-Oct-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Type 1 (T1) Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C H MClick to see conserved feature residue pattern help
Evidence:
  • Structure:3ABG: Myrothecium verrucaria Bilirubin Oxidase binds copper at T1 copper binding site
  • Comment:Type 1 (T1) copper sites are characterized by their conserved H...C...H...M copper ligands.
  • Comment:Some members bind copper at the T1 site with three amino acid residues (HCH), instead of four (HCHM).

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        #
3ABG_A        347 NTPRQFRFGRtg------------ptWTINGVAFa----dVQNRLLANVPVG------------TVERWELINagngWTH 398  Myrothecium v...
YP_004295284  486 APVRYWRFERkn------------gmWAINDKFM------NARSAGANMALG------------SYEIWDLDNpsggWSH 535  Nitrosomonas ...
XP_003057434  838 VTVRTLIFARtg------------geWVINDKTWrsgdrdAMGRIEAAAQYG------------CLEVWHIITggggWHH 893  Micromonas pu...
YP_003268687  693 AIHRTFEFGRssgt--------dsapWTVKTDGGsgl-amDPRRLSAAPEKG------------SVEIWHLENggggWAH 751  Haliangium oc...
YP_001789109  472 RITRTFEWGRgn------------ggWVVNDRPM------SCDEIRFTMKRG------------AMERWIYRTgg-gWSH 520  Leptothrix ch...
NP_745328     746 ARHREFIFGRsdgt--------dttpWTIKTDGGfgy-smDPRRISAAPQLAnqstdggfsgdgTLEVWKIVNggngWSH 816  Pseudomonas p...
YP_003799121  468 QGKREFIFNRgn------------gmWTVNGRPY------KDGQVVAHVQRN------------SAEIWTFKNggggWDH 517  Candidatus Ni...
EJO93488      420 LPVRKFLFERrq------------nmWAINGQFI------NLNTPRALVPMG------------AMEIWELYSvddgWDH 469  Pseudomonas m...
XP_002534646  561 ARERTFVFGDgakqssrngatsfigpWGVRVDNGdml-saDYSRISAAPKMG------------TREVWTLINggggWDH 627  castor bean
YP_001791621  706 ARHRTFEFGRsggt--------daqpWTIRTDHDlav-gaDPRRTSAAPQLTqgptpagfagngTLEVWKLDLgg-gWSH 775  Leptothrix ch...
Feature 1                                                                                  #    # 
3ABG_A        399 PIHIHLVDFKVISRtsgn---------nartVMPYES--GLKDVVWLGR----RETVVVEAHYAPFpGVYMFHCHNLIHE 463  Myrothecium v...
YP_004295284  536 PVHIHFEEGHILKRyvng---------ievpVPAHEK--GRKDVYVLGP----NEKVRVFIRFRDFpGKYVMHCHNTIHE 600  Nitrosomonas ...
XP_003057434  894 PVHLHLIDAWIVERkdgredearkawpegrgVFPYET--GSKDVFFVGF----NEHVTIAFFADSNrGNYMFHCHNLIHE 967  Micromonas pu...
YP_003268687  752 PIHIHFEEGQIFRRdg-------------gaPPAWERw-ARKDVYRVGPmpdsGDSVDIAIRFREFlGSFMEHCHNTQHE 817  Haliangium oc...
YP_001789109  521 PIHHHFVEGRIIKRng-------------raIPPTSPefGRKDVVWLGE----GDEVEYWVKATDYlGVYPIHCHNVVHE 583  Leptothrix ch...
NP_745328     817 PVHVHFEEGVILSRdg-------------kaPPEWEKw-ARKDVYRIGSepdsSEEVEMAIRFREFaGTYMEHCHNTQHE 882  Pseudomonas p...
YP_003799121  518 PIHVHHNEFLLLKRng-------------lpVADIEA--GRKDVVRLDP----GGEVELLMRFRDFeGQYPIHCHNVLHE 578  Candidatus Ni...
EJO93488      470 PVHIHFEEGRLLSKttng---------ksvaIAAHEK--GRKDVFNISD----RTVLRVLVRFRDYkGKYVMHCHNLIHE 534  Pseudomonas m...
XP_002534646  628 PIHIHFEEGQILERdgs-----------askVPAWEQ--GRKDVYRLHA----SGKLKITMQFRDWgGMFMEHCHNTVHE 690  castor bean
YP_001791621  776 PIHIHFEEGIVLRRgg-------------kaPPDWEKw-ARKDVFRLGPdsesGDSVEVALRFREFaGTFVEHCHNTQHE 841  Leptothrix ch...
Feature 1            #      
3ABG_A        464 DHDMMAAFNA 473  Myrothecium verrucaria
YP_004295284  601 DHAMMVRWDI 610  Nitrosomonas sp. AL212
XP_003057434  968 DDDMLLAFTV 977  Micromonas pusilla CCMP1545
YP_003268687  818 DHAMLMRWDL 827  Haliangium ochraceum DSM 14365
YP_001789109  584 DKGMMMLFAV 593  Leptothrix cholodnii SP-6
NP_745328     883 DSSMLLRWDL 892  Pseudomonas putida KT2440
YP_003799121  579 DHAMMAMFEI 588  Candidatus Nitrospira defluvii
EJO93488      535 DHAMMLRWDI 544  Pseudomonas mendocina DLHK
XP_002534646  691 DNAMLLRWEI 700  castor bean
YP_001791621  842 DSSMLLRWDV 851  Leptothrix cholodnii SP-6

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