3ABG


Conserved Protein Domain Family
CuRO_2_BOD

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cd13866: CuRO_2_BOD 
Click on image for an interactive view with Cn3D
The second cupredoxin domain of Bilirubin oxidase (BOD)
Bilirubin oxidase (BOD) catalyzes the oxidation of bilirubin to biliverdin and the four-electron reduction of molecular oxygen to water. It is used in diagnosing jaundice through the determination of bilirubin in serum. BOD is a member of the multicopper oxidase (MCO) family that also includes laccase, ascorbate oxidase and ceruloplasmin. MCOs are capable of oxidizing a vast range of substrates, varying from aromatic compounds to inorganic compounds such as metals. Although the members of this family have diverse functions, majority of them have three cupredoxin domain repeats. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 2 of 3-domain MCOs has lost the ability to bind copper.
Statistics
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PSSM-Id: 259934
Aligned: 19 rows
Threshold Bit Score: 205.568
Created: 30-Nov-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Domain 3Domain 1
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:Domain 3 interface [polypeptide binding site]
Evidence:
  • Structure:3ABG; Myrothecium verrucaria Bilirubin Oxidase cupredoxin domains 2 and 3 interface, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                        # #              
3ABG_A        169 YGEFDIPMILTSKQYTANGNlvtt-ngeLNSFWGDVIHVNGQPWPFKNVEPRKYRFRFLDAAVSRSFGLYFADtdai--- 244  Myrothecium v...
XP_002534646  374 NLDYDVNLMLADKAWNKDGQmqfd-ifnLDGFLGDQMTVNAVYKPYFEVERRKYRFRILNASVSRFFKLCLSDg------ 446  castor bean
YP_003799121  292 SGEYDVPILLTDKAFDPGDGllyldttnTAGVVGDKVLVNGVIQPYFQVARRKYRFRFLNAGPSRFYQLFLSHg------ 365  Candidatus Ni...
YP_004293817  307 SGAYDYPLAFQDKRFDANGMhifd-emdSEGTLGDKVTVNGIIEPVLKVASRKYRFRLLNAGIARFYQFHLVTpnn---- 381  Nitrosomonas ...
EJO93488      236 SHPYDYPLSFCDRRFDPNGMlyyd-qvsPEGILGDKTIVNGKIQPVLRVARRKYRLRLLNGGPSRFYQFYLVRpnn---- 310  Pseudomonas m...
YP_003268687  449 NRDYDVNLVIADKAWDQAGQlffn-ifnLDGFIGDQILVNWLWKPYLDVRARRYRFRILNGSVSRYFKIALVVerndnsg 527  Haliangium oc...
YP_003890259  195 KGNYDIPLILQTKRFAQDGSiify-nqtPDNLYGNVLLVNGVPSPKMEVARRKYRFRILNASGGRNYQLALSQkidsl-- 271  Cyanothece sp...
AFK72558      475 NRDYDVNLVIADKAWDANGQlwfn-pfnTDGFLADQILVNWQYKPRLKVRARSYRFRLLNGSVSRYFKFAVVReiagtsg 553  Pseudomonas s...
YP_001789689  491 NRDYDINLVIADKAWGRDGQlwfn-vfnKDGFLGDRILTNFVYHPYLDVRARRYRFRILPGSVSRYFALALVHertdtkg 569  Leptothrix ch...
YP_001789109  279 FPAFDIPVLVTDLLIDPNTEqavfdvldDDGHIGDKYVVNGKIQPYCEVFQRRYRFRVLNIGPSRFHQLFLTNpdnp--- 355  Leptothrix ch...
Feature 1                            ## #####  ### #                    # ######                  
3ABG_A        245 ------------dtrlPFKVIASDSGLLEHPADTS-----------------LLYISMAERYEVVFDFsd--------ya 287  Myrothecium v...
XP_002534646  447 ---------------sPMIQIANDGNLLPRPVVLAq----------------LDEMGIAERYDIVIDFsry-------tn 488  castor bean
YP_003799121  366 ---------------mTFTQISNDGNLLERPVERQt----------------PTRLGAAERIDVIIDFsks-------ki 407  Candidatus Ni...
YP_004293817  382 -------------vqqSFTYIANDGNLLPKPLLNRk----------------NVRLGVAERADIVVDFsly-------pl 425  Nitrosomonas ...
EJO93488      311 -------------viqPFTYIANDGNLLEKPLLNQt----------------NVRLGVAERADIVVDFsry-------pl 354  Pseudomonas m...
YP_003268687  528 qfdg--tenntsydlvPFYMIANDGNILEHSVHFNgsslngy----tnqkgrLPTQAIAERYDIIVDFaqf-------ap 594  Haliangium oc...
YP_003890259  272 ------------tegeKLIVIGSDGGLLSEPVEIVtp-------------eqVLPVVMAERYDVIIDFsky-------pl 319  Cyanothece sp...
AFK72558      554 efkg-psgsnlsyarvPFHMIANDGNIMEHAVPFDgtmdlngdgnlqdnngvLPLQAIAERYDIIINFakng-----ika 627  Pseudomonas s...
YP_001789689  570 eikatvggkkisydrvPFHMVANDGNILEHAVPFDgtvdldangdklehkgtLPQMAIAERYDIVVDFkkf-------ka 642  Leptothrix ch...
YP_001789109  356 ------------rqsiPFWQISSDGNLLPKPLQVT-----------------SVRLSCAERADLIFDFrkltapggpaag 406  Leptothrix ch...
Feature 1                                                                         
3ABG_A        288 GKTIELRNLGgsiggig-------------------------------tdtdydnTDKVMRFVV 320  Myrothecium verrucaria
XP_002534646  489 GARVHLVNLAehddgrrvahdls-------------------lgealsgkskdpcVGRFLEFRV 533  castor bean
YP_003799121  408 GDQICLENRLrqtggak-------------------------------padveskGVPLLRFDV 440  Candidatus Nitrospira defluvii
YP_004293817  426 GTELYLVNRWeqtssrg-------------------------------pkgvkapGMKVLKIIV 458  Nitrosomonas sp. AL212
EJO93488      355 GTELYLANRLthrpedtr-----------------------------rpyqvvapGEWVLKIVV 389  Pseudomonas mendocina DLHK
YP_003268687  595 GTKLYFVNMMehddgrgpkdiipirdil---------dgeyapdldgdrhrtdptVGKFLEFRV 649  Haliangium ochraceum DSM 14365
YP_003890259  320 GTEVFLQNVIqgldfsg-------------------------------svaknaqINPIMRFDV 352  Cyanothece sp. PCC 7822
AFK72558      628 GDKLYFVNLMehdsgkgpnqaipladvlsek----ykavikqtskgpqwdngdpaVGKFLQLWV 687  Pseudomonas sp. ND6
YP_001789689  643 GDKLYFVNTQehadpvktnrripvadvltgkykpavledkdgdgvadrwtdgdpgVGKFMELRI 706  Leptothrix cholodnii SP-6
YP_001789109  407 ATRLWLENRLlqdngrgpe---------------------------dellsagraANALIEFRI 443  Leptothrix cholodnii SP-6

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