1GSK,3GYR,3ABG


Conserved Protein Domain Family
CuRO_1_BOD_CotA_like

?
cd13844: CuRO_1_BOD_CotA_like 
Click on image for an interactive view with Cn3D
The first Cupredoxin domain of Bilirubin oxidase (BOD), the bacterial endospore coat component CotA, and similar proteins
Bilirubin oxidase (BOD) catalyzes the oxidation of bilirubin to biliverdin and the four-electron reduction of molecular oxygen to water. CotA protein is an abundant component of the outer coat layer in bacterial endospore coat and it is required for spore resistance against hydrogen peroxide and UV light. Also included in this subfamily are phenoxazinone synthase (PHS), which catalyzes the oxidative coupling of substituted o-aminophenols to produce phenoxazinones. PHS has been shown to participate in diverse biological functions such as spore pigmentation and biosynthesis of the antibiotic grixazone. These are Laccase-like multicopper oxidases (MCOs) that are able to couple oxidation of substrates with reduction of dioxygen to water. MCOs are capable of oxidizing a vast range of substrates, varying from aromatic compounds to inorganic compounds such as metals. Although the members of this family have diverse functions, majority of them have three cupredoxin domain repeats. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 1 of 3-domain MCOs contains part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.
Statistics
?
PSSM-Id: 259913
Aligned: 48 rows
Threshold Bit Score: 153.988
Created: 30-Aug-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: trinuclear Cu binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H H H HClick to see conserved feature residue pattern help
Evidence:
  • Structure:1GSK; Bacillus Subtilis endospore Coat Protein binds three Cu ions.
  • Comment:Trinuclear copper site ligands are typically one or two HxH motifs that can be in the same domain/subunit or in different domains/subunits.
  • Comment:The trinuclear copper binding site of 3-domain MCOs is located at the interface of cupredoxin domains 1 and 3.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
1GSK_A         25 KTYYEVTMEECTHQLHr-----DLPPTRLWGYNGLf----------------------------------PGPTIEVKRN 65   Bacillus subt...
YP_004196870   55 LNQIELRMKEFKSMVLpanavtGYTGTWVWGYLQPgqaagqllg-----------------gtvpgrqsyLGPVIAATRG 117  Geobacter sp....
YP_002377549   63 GTQLSIPIAANSHDFGlg--laGVTTTPTWGYGGAt---------------------------------yLGPTIVAQSG 107  Cyanothece sp...
EGZ23863       50 GGAIDMQIGRSTHNWTe----dGSLSGAIYGYGLKnst-----------------------------ptfPGPTIKVARG 96   Phytophthora ...
YP_006721539   74 AAHYTFNIGQFTDQLHp-----ALGPTTLWGYNPQnalgvtg----------------------vpaqkhLGGIIVANKG 126  Geobacter met...
NP_952447      90 SDYYEIELRQYSEQMHs-----DLPPTTLRGYVQVnngtdttsctdpslnlatpcttanntvapapgprhLGPIIVAQKD 164  Geobacter sul...
CCA25323       59 GHHVDMQMARSRHYWEdgdgdnGGLSDIIYGYGLLndt-----------------------------psfPGPTILVSRK 109  Albugo laibac...
YP_004404140  124 CDYYEIGLTEYTQRLHq-----DLPATRLRGYRQLnlgtdsdghn---------------tvappsrawhLGPVVLARRG 183  Verrucosispor...
YP_003207649   92 VGSTEIHICEFDASVLpsgtpgVTAKTRSWGYIVGpscpapgt-------------------peytqdsyIGPVLVAVRN 152  NC10 bacteriu...
YP_846365     130 ICEYQTNVLPPGTPVVgav-agVAPATWVWGYQEGaactpg-----------------------lqprsyLGPVVLANRH 185  Syntrophobact...
Feature 1                                                                                         
1GSK_A         66 ENVYVKWMNNLpsthflpidhti--------------------------------------------------------- 88   Bacillus subt...
YP_004196870  118 VPTEMKFVNDLptamttnvlaykystdqtlhwadplnag---------------------------------asmcahma 164  Geobacter sp....
YP_002377549  108 TPINIDWINNLtgninahllpvd--------------------------------------------------------- 130  Cyanothece sp...
EGZ23863       97 VPINITWYNELeaphllqesvqlt-------------------------------------------------------- 120  Phytophthora ...
YP_006721539  127 VPIQLTFTNNLpnkhilpvdks---------------------------------------------------------- 148  Geobacter met...
NP_952447     165 RPVRVKFINKLptgaggnlfipvdqtvmgsgpf----------------------------------------------q 198  Geobacter sul...
CCA25323      110 QAVNVTWYNRLgrkhvlddfvedsl------------------------------------------------------- 134  Albugo laibac...
YP_004404140  184 RPVRIKFINQLpagpagelflpvdptv----------------------------------------------------- 210  Verrucosispor...
YP_003207649  153 LPSTLKFVNDLgnadstgvlaykysvdqtihwadpldlh---------------------------------atahcyhl 199  NC10 bacteriu...
YP_846365     186 TPTQMNYYNRLpganvanvkayttstdqtliwgdplslntapppinfnvpvgtalpelnlcwqaaqafvpgvsvmpapcl 265  Syntrophobact...
Feature 1                                  # #                                                    
1GSK_A         89 ---------hhsdsqheepeVKTVVHLHGGVTPDDSDGYPEAWFSkdfeqt------------------------gpyfk 135  Bacillus subt...
YP_004196870  165 vppepesecasnfgelfdapIPVAVHLHGGEVPPQLDGGPDSWFTsdgtmkgasfy---------------srdgatasn 229  Geobacter sp....
YP_002377549  131 ---------ttihwahpssgIPVVTHLHGGKNLSLSDGLPDAWVTntgqrgrlaq-----------------pattgsgn 184  Cyanothece sp...
EGZ23863      121 -------ltqhasacypycgVPVVTHVHGMESPARYDGLPFLSIYkn--------------------------------q 161  Phytophthora ...
YP_006721539  149 ----------anfpdaaqhvNDASVHLHGGFVPWISDGGPMAYFGpptianpngvygpsvsdgvnpnlfqqvlnsnldpg 218  Geobacter met...
NP_952447     199 idydpvtkqatalksgtftqNRAELHLHGGRTPWISDGTPHQWITpagemtdyptgvsv---------envpdmpdpgpg 269  Geobacter sul...
CCA25323      135 -------lrftdshcyphcgVPAVVHVHGLEASPQNDGMPRYSIYdn--------------------------------q 175  Albugo laibac...
YP_004404140  211 ----paagegplggpapypqNRAVLHLAGAHTGWISAGNPYQWITpageitpyptgvgl---------tpvpdmpppgpg 277  Verrucosispor...
YP_003207649  200 aedghipdpgsecaqnyagpIPAAVHLHGGIIPPELDGGPDAWVAsdgrkghgyy-----------------tsapappn 262  NC10 bacteriu...
YP_846365     266 nnygflglqavpppasygspVPASVHIHGGEVPSVVDGGPDSWWTrngvfghgyys--------------kggtndatag 331  Syntrophobact...
Feature 1                          # #                       
1GSK_A        136 rEVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPK 178  Bacillus subtilis
YP_004196870  230 ySIYRYPNNQEGAPLWFHDHTLGATRLNVYAGMAGGYLLLDPA 272  Geobacter sp. M18
YP_002377549  185 sLTYKYPNEQEAATIWYHDHALGITRLNVYAGLAAFYIIRDAF 227  Cyanothece sp. PCC 7424
EGZ23863      162 sQEFHYLNNQSASTKTYHDHSNGLTRLNTWAGLMGAYIISDAE 204  Phytophthora sojae
YP_006721539  219 qAEYYYPNQQSARMMWYHDHTHDCTRLNAYAGLASVYLIRDTF 261  Geobacter metallireducens GS-15
NP_952447     270 aQTYYWTNQQSSRMLFYHDHAWGITRLNVYVGEAAGYLIRDAV 312  Geobacter sulfurreducens PCA
CCA25323      176 sTTATYLNAQSPSTKLYHDHAIGLARLSVWAGLVGLYVIQDEE 218  Albugo laibachii Nc14
YP_004404140  278 aTTLYYPNEQSARLLWFHDNTVGLSRLTIYSGQIALFLLTDEA 320  Verrucosispora sp. AB-18-032
YP_003207649  263 gFTYKYPNAQETAPLIFHDHVLGNLRLNLYAGIAAGYIIEDNT 305  NC10 bacterium 'Dutch sediment'
YP_846365     332 kAVYVYPNGQEAAPIWFHDHMLGATRLNVYAGLAGGYIITEPA 374  Syntrophobacter fumaroxidans MPOB

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap