3SBT,3ZEF,4I43


Conserved Protein Domain Family
Aar2_C

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cd13778: Aar2_C 
Click on image for an interactive view with Cn3D
C-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor
This family consists of the C-terminal domain of eukaryotic Aar2 and Aar2-like proteins. Aar2 is a U5 small nuclear ribonucleoprotein (snRNP) particle assembly factor and part of Prp8, which forms a large complex containing U5 snRNA, Snu114, and seven Sm proteins (B, D1, D2, D3, E, F and G). Upon import of the complex into the nucleus, Aar2 phosphorylation leads to its release from Prp8 and replacement by Brr2p, thus playing an important role in Brr2p regulation and possibly safeguarding against non-specific RNA binding to Prp8. Aar2p binds directly with the RNaseH-like domain in the C-terminal region of Prp8p. In yeast, Aar2 protein is involved in splicing pre-mRNA of the a1 cistron and other genes important for cell growth.
Statistics
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PSSM-Id: 260100
Aligned: 123 rows
Threshold Bit Score: 49.9863
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
inter-domainheterodimer
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:inter-domain interface [polypeptide binding site]
Evidence:
  • Structure:3SBT: Saccharomyces cerevisiae Aar2 protein C-terminal domain interacts with N-terminal domain; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #### ###                                           ##  ##  ## ###   #           
3SBT_B       175 SLNYTVINf---kSREAIRpghe-medFLDKSYYLNTVMLQGifkn-ssnYFGELQFAFLNAMFFgnyGSSLQWHAMIEL 249 Saccharomyces c...
Q6CMG2       175 TFRYTPIRf---kDPESMRpefk-mqdFLDKSWYLMQVILIKyhysnlksLFGELQFSYLNSILFanyGSSLQWHNIIEL 250 Kluyveromyces l...
EDK39412     189 EINYTIIQhe--kHREDRTgqel-tddHFDKSWYLQELYGHDne-----lLIAELQLAFVNFVAVgsfCSGMQWLSLAKL 260 Pichia guillier...
Q6FXS4       170 ALRYAYINf---kSREAIRdthk-medFYDKSHYLFDVVLPQqfrdsmsaYMGELQMSFINAMFFasyGSSMQWHNLLQL 245 Candida glabrata
Q6BYY3       205 ELRYTIIQfk--iNKENTEsveevtenYLDKSWYLSQLYGNDie-----lMFGELQLSFINFVILgnfCSGLQWLNIIKL 277 Debaryomyces ha...
XP_001647421 169 YLNYTPIEf---kSNIAIRpshe-medFLDKSYYLNKIILPSyynnniyrLFCELQFSFLNSMIFanyGSNMQWHSLIEL 244 Vanderwaltozyma...
EEQ41187     168 ELRYTIIQgtvpgETHGKDlsai-trdALDRSWYLSQLFGHDle-----lLLGELQLCFVHFIVLgnlCSCTQWSNLLKL 241 Clavispora lusi...
CCE78769     206 ELLYTIIDfk--mKNSKATsaeeitqsSLDRSWQFNDIYGHDtd-----lFFGELQLAFVNYILLgsfSSGIQWIKLIKL 278 Millerozyma far...
EGV64483     193 EIQFTILNfk--qKRDNVSleqi-sqdYLDKSWYLEETFGHDtd-----fVLGELQLSFVQFIILgnfCSGLQWLNTLKL 264 Candida tenuis ...
CCH60566     180 YLDYIDIQf---kSAMAIRkgye-midYYDTSNYLQQVIEQHsi----qeIINQMKIAYANMNYIgnfGSAEHWQLLIKL 251 Tetrapisispora ...
Feature 1                          #   #  ##                                                     
3SBT_B       250 ICssat-----vpkHMLDKLDEILYYQIktlpeq------ysdillNERVWNICLYSsfqk------------------- 299 Saccharomyces c...
Q6CMG2       251 VCfsdclt-egkykEIMEQLDSLLCTQMkripee------yrefliNIELLQKCVRRskv-------------------- 303 Kluyveromyces l...
EDK39412     261 VStsksf--ldrnkNFFFQFLCTFHLQLiklpsellvdelnlhnqlNIKIYVEVMENfsdifdam--------------- 323 Pichia guillier...
Q6FXS4       246 LCdsn-------rfEQYKRLDEVVSVQInnipee------yfdtliNRECWTKLLKAhhs-------------------- 292 Candida glabrata
Q6BYY3       278 ILmsknf--mkssqKVALDFLTIFQHHLdklpk---------eyliDDLALNNLLDLqt--------------------- 325 Debaryomyces ha...
XP_001647421 245 LLnsset---sdkdIILKKLDKMLSEQIsslpme------yidytiNGETWDKFLNKslng------------------- 296 Vanderwaltozyma...
EEQ41187     242 VSmsasf--lyqnhTFADSFLQVLVAQLlkippeyis-stsnnsivDIPVYLQTMENlyhvfgqskawet---------l 309 Clavispora lusi...
CCE78769     279 IStcrsf--lmkdpVLAVKLLECLYFQLqnlpeeylsrdyslfssiDVDVYSQVFENlrnniftsefwn----------- 345 Millerozyma far...
EGV64483     265 LSmsktf--ivankSFSLKFLRSFKLQLesipaeyigetislnsavDTKNFIGIMENfvkdvypremwgnddccgkmkvn 342 Candida tenuis ...
CCH60566     252 ICqsetffkdekniSIKIQIDELISHQLeslsee------cvasfiEERLWREVFGDntk-------------------- 305 Tetrapisispora ...
Feature 1                              
3SBT_B       300 --------nslHNTEKIMENKY 313 Saccharomyces cerevisiae S288c
Q6CMG2       304 ---------plPSWKTLIQEQF 316 Kluyveromyces lactis
EDK39412     324 ----sgnccgkMKLKGNLQNIW 341 Pichia guilliermondii ATCC 6260
Q6FXS4       293 ---------qlPNTYNSMQTRF 305 Candida glabrata
Q6BYY3       326 ---------yvSVLENFARDMF 338 Debaryomyces hansenii
XP_001647421 297 --------eklTSTKSSLLQRL 310 Vanderwaltozyma polyspora DSM 70294
EEQ41187     310 rrvnaklgfdlSFASKVDDDNF 331 Clavispora lusitaniae ATCC 42720
CCE78769     346 askdtrvasskRLWESIMTMNE 367 Millerozyma farinosa CBS 7064
EGV64483     343 gmvvdtwkkilLLIQQRFQLDL 364 Candida tenuis ATCC 10573
CCH60566     306 ---------sfPKILNSLYHRQ 318 Tetrapisispora blattae CBS 6284

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