Conserved Protein Domain Family
PBP2_iGluR_delta_1

?
cd13730: PBP2_iGluR_delta_1 
The ligand-binding domain of an orphan ionotropic glutamate receptor delta-1, a member of the type 2 periplasmic-binding fold protein superfamily.
This group contains the ligand-binding domain of the delta1 receptor of an orphan glutamate receptor family. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of delta receptors belongs to the periplasmic-binding fold type I. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetical analysis shows that both GluRdelta1 and GluRdelta2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans.
Statistics
?
PSSM-Id: 270448
Aligned: 12 rows
Threshold Bit Score: 504.105
Created: 15-Nov-2007
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to iGluR-delta2.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #                       
XP_426488     437 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKNLGFKYEIYQAPdgKYGHQLqnGSWNGMIGELINKRADL 516  chicken
XP_001333587  437 GITLKVVTLLEEPFVMVAenilgqpKRYKGFSIDVLDALAKILGFKYEMYQVAdaKYGSPQtnGSWNGMIGELIGKRADV 516  zebrafish
NP_001096470  437 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIEILDELSNRLGFKYEIYQAPdgKYGHQLsnGSWNGMIGELINKRADI 516  western clawe...
Q62640        436 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 515  Norway rat
BAF85793      436 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 515  human
NP_060021     436 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 515  human
BAA86534      218 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 297  human
Q9ULK0        436 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 515  human
BAH13646        7 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 86   human
XP_002191573  437 GVTLKVVTVLEEPFVMVAenilgqpKGYKGFSIDVLDALAKNLGFKYEIYQAPdgKYGHQLqnSSWNGMIGELINKRADL 516  zebra finch
CAF95059      527 GVTIKVVTLLEDPFVMVAenilgqpKRYKGFSIDVLDALAKSLGFKYEIYQVAdsKYGSELpnGSWNGMIGDLINKRADL 606  Tetraodon nig...
BAE23610      436 GLTLKVVTVLEEPFVMVAenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgRYGHQLhnTSWNGMIGELISKRADL 515  house mouse
Feature 1            ###    #            #                                                        
XP_426488     517 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekinifslfapfdfavwaciaaaipivgvlifvlnriqavraqnas 596  chicken
XP_001333587  517 AISAITITPERENVVDFSKRYLDYSVGILMTKTEerlnifsllapfdlavwaciaaaipvvgvmvfllrrvqsvrsqnpp 596  zebrafish
NP_001096470  517 AISAITITPERENVVDFTKRYLDYSVGILIKKPEerinifslfapfdfavwaciaavipvvgvlifvlnriqavraqnss 596  western clawe...
Q62640        516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavrsqsat 595  Norway rat
BAF85793      516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 595  human
NP_060021     516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 595  human
BAA86534      298 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 377  human
Q9ULK0        516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 595  human
BAH13646       87 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 166  human
XP_002191573  517 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekinifslfapfdfavwaciaaaipivgvlifvlnriqavraqsaa 596  zebra finch
CAF95059      607 AVSAITITPERENVVDFSKRYLDYSVGILLRKPEekvnifslfapfdlavwaciaaaipivgvlifllnrlqalrssaqn 686  Tetraodon nig...
BAE23610      516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavrsqsat 595  house mouse
Feature 1                                                                                         
XP_426488     597 qpspsasstlh--saiwvvygafvqqggestvnsvamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 674  chicken
XP_001333587  597 gphqpasvttsfqsaiwivygafvqqggesfmssmalriamgswwlftlivcssytanlaayltvsrmdnAIRTFQDLsk 676  zebrafish
NP_001096470  597 qtsqstsstlh--saiwivygafvqqggesaansvamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLak 674  western clawe...
Q62640        596 qprpsasatlh--saiwivygafvqqggessvnsvamrivmgswwlftlivcssytanlaafltvsrmdsPVRTFQDLsk 673  Norway rat
BAF85793      596 qprpsasatlh--saiwivygafvqqggessvnsmamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 673  human
NP_060021     596 qprpsasatlh--saiwivygafvqqggessvnsmamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 673  human
BAA86534      378 qprpsasatlh--saiwivygafvqqggessvnsmamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 455  human
Q9ULK0        596 qprpsasatlh--saiwivygafvqqggessvnsmamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 673  human
BAH13646      167 qprpsasatlh--saiwivygafvqqggessvnsmamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 244  human
XP_002191573  597 qpgpsvsstlh--saiwvvygafvqqggestvnsvamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 674  zebra finch
CAF95059      687 vlhangslhs----aiwivygafvhqggdgmvasmalkivmgswwlftlivcssytanlaayltvsrmdhAIRTFQDLar 762  Tetraodon nig...
BAE23610      596 qprpsasatlh--saiwivygafvqqggessvnsvamrivmgswwlftlivcssytanlaafltvsrmdnPIRTFQDLsk 673  house mouse
Feature 1                    ###                                                     ##           
XP_426488     675 qmdISYGTVRDSAVYEYFKakgtnpleqdntfaelwrtisknngaDNCVSNPSEGIRKAKKGnYAFLWDVTVVEYAALTd 754  chicken
XP_001333587  677 qseINYGTVRESAVFEYFRvkgtnpleqdstfaelwrtinknqgqDNSVTSPAEGIRKVKRDpYAFLWDMAVLEYAALTd 756  zebrafish
NP_001096470  675 qvdLPYGTVKDSSVYEYFKskgtntlvqdrtfaelwrtigknngsDNCVSSPSEGIRKAKRGnYAFLWDVTVVEYAALTd 754  western clawe...
Q62640        674 qleMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSNPSEGIRKAKKGnYAFLWDVAVVEYAALTd 753  Norway rat
BAF85793      674 qveMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSSPSEGIRKAKKGnYAFLWDVAVVEYAALTd 753  human
NP_060021     674 qveMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSSPSEGIRKAKKGnYAFLWDVAVVEYAALTd 753  human
BAA86534      456 qveMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSSPSEGIRKAKKGnYAFLWDVAVVEYAALTd 535  human
Q9ULK0        674 qveMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSSPSEGIRKAKKGnYAFLWDVAVVEYAALTd 753  human
BAH13646      245 qveMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSSPSEGIRKAKKGnYAFLWDVAVVEYAALTd 324  human
XP_002191573  675 qmdISYGTVRDSAVYEYFKakgtnpleqdntfaelwrtisknngaDNCVSNPSEGIRKAKKGnYAFLWDVTVVEYAALTd 754  zebra finch
CAF95059      763 qmdVDYGTVRDSAVYDYFKnkgtnpleqdatyaelwrtiskssgmEHSVSSPSEGIRKAKKNpYAFLWDMAVLEYAALTd 842  Tetraodon nig...
BAE23610      674 qleMSYGTVRDSAVYEYFRakgtnpleqdstfaelwrtisknggaDNCVSNPSEGIRKAKKGnYAFLWDVAVVEYAALTd 753  house mouse
Feature 1                                                              
XP_426488     755 deCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQESGDLDVLKQKWWP 807  chicken
XP_001333587  757 ddCTLVVTGngMSSKGYGLALQHGSPYRDLFSQKILDLQEKGDLDILKQKWWP 809  zebrafish
NP_001096470  755 deCSVAVTGntISSKGYGIALQHGSPYRDIFSQRILEFQDSGRLDVLKEKWWP 807  western clawed frog
Q62640        754 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  Norway rat
BAF85793      754 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  human
NP_060021     754 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  human
BAA86534      536 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 588  human
Q9ULK0        754 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  human
BAH13646      325 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 377  human
XP_002191573  755 deCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQESGDLDVLKQKWWP 807  zebra finch
CAF95059      843 ddCTITVSGnsMSSKGYGIAMQHGSPYRDLFSQKILELQEKGDLDIMKQKWWP 895  Tetraodon nigroviridis
BAE23610      754 ddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  house mouse

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap