Conserved Protein Domain Family
PBP2_iGluR_AMPA_GluR1

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cd13729: PBP2_iGluR_AMPA_GluR1 
The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily.
This group contains the ligand-binding domain of the AMPA receptor subunit GluR1, a member of non-NMDA (N-methyl-D-aspartate) type iGluRs which are ligand-gated ion channels that mediate excitatory synaptic transmission in the central nervous system. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of AMPA receptors belongs to the periplasmic-binding fold type I. The AMPA receptors are the most commonly found receptor in the nervous system and sensitive to the artificial glutamate analog, AMPA. They consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current.
Statistics
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PSSM-Id: 270447
Aligned: 12 rows
Threshold Bit Score: 509.182
Created: 23-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Glutamate binding site based on sequence similarity to other members of the iGluR AMPA family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
AAI62505     404 NRTYIVTTIL--------------------------ESPYVMLKKnhehftgnDKYEGYCVELAAEIAKHVGYHYILKIV 457  zebrafish
AAK52501     405 NRTYIVTTIL--------------------------ESPYVMLKKnheqlvgnDKYEGYIVELAAEIAKHVGYQYKLKIV 458  Mozambique til...
NP_991293    404 NRTYVVTTIL--------------------------EAPYVMLKKnheqlvgnDKYEGYCVELAAEIAKHVGYSYRLELV 457  zebrafish
AAA86646     405 NRTYIVTTIL--------------------------ESPYVMLKKnheqlvgnDKYEGYIVELAAEIAKHVGYQYKLKIV 458  white bass x s...
CAF97342     201 NKTYIITTILvrlgrapasfcveaetaatcdllrpqEAPYMMLKKnheqfegnDRYEGYCAELASEIAKHVGFSYKLELV 280  Tetraodon nigr...
NP_991161    404 NRTYIVTTIL--------------------------ESPYVMLKKnhehftgnDKYEGYCVELAAEIAKHVGYHYILKIV 457  zebrafish
Q38PU8       406 NRTYIVTTIL--------------------------EDPYVMLKKnanqfegnDRYEGYCVELAAEIAKHVGYSYRLEIV 459  crab-eating ma...
NP_001001774 406 NRTYIVTTIL--------------------------EDPYVMLKKnanqfegnERYEGYCVELAAEIAKHVGYHYRLEIV 459  chicken
AAL34308     405 NRTYIVTTIL--------------------------ESPYVMLKKnheqlvgnDKYEGYIVELAAEIAKHVGYQYKLKIV 458  Mozambique til...
BAH12192     326 NRTYIVTTIL--------------------------EDPYVMLKKnanqfegnDRYEGYCVELAAEIAKHVGYSYRLEIV 379  human
ACJ64117     406 NRTYIVTTIL--------------------------EDPYVMLKKnanqfegnERYEGYCVELAAEIAKHVGYHYRLEIV 459  domestic pigeon
NP_001153151 406 NRTYIVTTIM--------------------------ESPYVMLKKnadqlegnDRFEGYCVELAAEIAKHVGFKYKLEIV 459  African clawed...
Feature 1            #                           ###    #                                        
AAI62505     458 AdgkYGARDaetMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 537  zebrafish
AAK52501     459 SdgkYGARDpetKMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 538  Mozambique til...
NP_991293    458 GdgkYGARDaetMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 537  zebrafish
AAA86646     459 SdgkYGARDpetKMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 538  white bass x s...
CAF97342     281 GdgkYGARDaetKMWNGMVGELVYGKADVAVAPLTITLVREQVIDFTKPFMSLGISIMIKKPTkskpgvfsfldplayei 360  Tetraodon nigr...
NP_991161    458 AdgkYGARDaetMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 537  zebrafish
Q38PU8       460 SdgkYGARDpdtKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayei 539  crab-eating ma...
NP_001001774 460 RdgkYGARDpdtKTWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayei 539  chicken
AAL34308     459 SdgkYGARDpetKMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTkskpgvfsfldplayei 538  Mozambique til...
BAH12192     380 SdgkYGARDpdtKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayei 459  human
ACJ64117     460 RdgkYGARDpdtKTWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayei 539  domestic pigeon
NP_001153151 460 KdgkYGARDsdmKAWNGMVGELVYGRADLAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayei 539  African clawed...
Feature 1                                                                                        
AAI62505     538 wmcivfayigvsvvlflvsrfspyewhaddcedgaeenpnqpssssaqpgqnqqn-----------qnqqsqeqtnefgi 606  zebrafish
AAK52501     539 wmcivfayigvsvvlflvsrfspyewhaedyeegaepqtptqaaasngvqqgqtptq-------qnttqqspeqtnefgi 611  Mozambique til...
NP_991293    538 wmcivfayigvsvvlflvsrfspyewhaddeeetadqqnqnqppspepnqspnqsqnq-----reekqekqpehtnefgi 612  zebrafish
AAA86646     539 wmcivfayigvsvvlflvsrfspyewhaedyeeggepqtptqasasngvqqgqtqaq-------qntnqqspeqtnefgi 611  white bass x s...
CAF97342     361 wmcivfayigvsvvlflvsrfspyewkaedsdeddtlpsstsrralpsselphsagfspaqnqnqqkekdapehtndfgi 440  Tetraodon nigr...
NP_991161    538 wmcivfayigvsvvlflvsrfspyewhaddcedgaeenpnqpssssaqpgqnqqn-----------qnqqsqeqtnefgi 606  zebrafish
Q38PU8       540 wmcivfayigvsvvlflvsrfspyewhseefeegrdqttsdqsn--------------------------------efgi 587  crab-eating ma...
NP_001001774 540 wmcivfayigvsvvlflvsrfspyewhteefeegrdqpandqtn--------------------------------efgi 587  chicken
AAL34308     539 wmcivfayigvsvvlflvsrfspyewhaedyeegaepqtptqaaasngvqqgqtptq-------qnttqqspeqtnefgi 611  Mozambique til...
BAH12192     460 wmcivfayigvsvvlflvsrfspyewhseefeegrdqttsdqsn--------------------------------efgi 507  human
ACJ64117     540 wmcivfayigvsvvlflvsrfspyewhteefeegrdqpandqtn--------------------------------efgi 587  domestic pigeon
NP_001153151 540 wmcivfayigvsvvlflvsrfspyewhneefeegkeqpttdqsn--------------------------------efgi 587  African clawed...
Feature 1                                                                                    #  #
AAI62505     607 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDAG 686  zebrafish
AAK52501     612 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDAG 691  Mozambique til...
NP_991293    613 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDGG 692  zebrafish
AAA86646     612 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDAG 691  white bass x s...
CAF97342     441 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDGG 520  Tetraodon nigr...
NP_991161    607 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDAG 686  zebrafish
Q38PU8       588 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLEAG 667  crab-eating ma...
NP_001001774 588 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLEAG 667  chicken
AAL34308     612 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLDAG 691  Mozambique til...
BAH12192     508 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLEAG 587  human
ACJ64117     588 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESAEDLAKqteIAYGTLEAG 667  domestic pigeon
NP_001153151 588 fnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltvermvSPIESADDLAKqteISYGTLDSG 667  African clawed...
Feature 1        ##                                                ##  #                       # 
AAI62505     687 STKEFFRrskIAVFEKMWSYMKsadPSVFVKTTDEGVMRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 766  zebrafish
AAK52501     692 STKEFFRrskIAVFEKMWSYMKaadPSVFVKTTDEGVMRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 771  Mozambique til...
NP_991293    693 STKEFFRrskIAVFEKMWSYMKsaePTVFVKTTDEGVVRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 772  zebrafish
AAA86646     692 STKEFFRrskIAVFEKMWSYMKaadPSVFVKTTDEGVMRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 771  white bass x s...
CAF97342     521 STKEFFRrskIAVFEKMWSYMRgadPSVFVKSTSEGVSRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGsnLDSKGYG 600  Tetraodon nigr...
NP_991161    687 STKEFFRrskIAVFEKMWSYMKsadPSVFVKTTDEGVMRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 766  zebrafish
Q38PU8       668 STKEFFRrskIAVFEKMWTYMKsaePSVFVRTTEEGMIRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 747  crab-eating ma...
NP_001001774 668 STKEFFRrskIAVFEKMWTYMKsaePSVFVRTTEEGMIRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 747  chicken
AAL34308     692 STKEFFRrskIAVFEKMWSYMKaadPSVFVKTTDEGVMRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 771  Mozambique til...
BAH12192     588 STKEFFRrskIAVFEKMWTYMKsaePSVFVRTTEEGMIRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 667  human
ACJ64117     668 STKEFFRrskIAVFEKMWTYMKsaePSVFVRTTEEGMIRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 747  domestic pigeon
NP_001153151 668 STKEFFKrskIAVFEKMWTYMRsaePSVFVKTTEEGMNRVRKSkgkYAYLLESTMNEYIEQRkpCDTMKVGgnLDSKGYG 747  African clawed...
Feature 1                                                
AAI62505     767 IATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 806  zebrafish
AAK52501     772 IATPKGSHLRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 811  Mozambique tilapia
NP_991293    773 VATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 812  zebrafish
AAA86646     772 IATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 811  white bass x striped sea-bass
CAF97342     601 VATPKGSPLRNPVNLAVLKLNEQGLLDKLKNRWWYdkGEC 640  Tetraodon nigroviridis
NP_991161    767 IATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 806  zebrafish
Q38PU8       748 IATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 787  crab-eating macaque
NP_001001774 748 IATPKGSALRGPVNLAVLKLSEQGVLDKLKSKWWYdkGEC 787  chicken
AAL34308     772 IATPKGSHLRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 811  Mozambique tilapia
BAH12192     668 IATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYdkGEC 707  human
ACJ64117     748 IATPKGSALRGPVNLAVLKLSEQGVLDKLKSKWWYdkGEC 787  domestic pigeon
NP_001153151 748 IATPKGSALRGAVNLAVLKLSEQGVLDKLKSKWWYdkGEC 787  African clawed frog

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