3DP4


Conserved Protein Domain Family
PBP2_iGluR_AMPA_GluR3

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cd13728: PBP2_iGluR_AMPA_GluR3 
Click on image for an interactive view with Cn3D
The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR3 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily.
This group contains the ligand-binding domain of the AMPA receptor subunit GluR3, a member of non-NMDA (N-methyl-D-aspartate) type iGluRs which are ligand-gated ion channels that mediate excitatory synaptic transmission in the central nervous system. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of AMPA receptors belongs to the periplasmic-binding fold type I. The AMPA receptors are the most commonly found receptor in the nervous system and sensitive to the artificial glutamate analog, AMPA. They consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current
Statistics
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PSSM-Id: 270446
Aligned: 14 rows
Threshold Bit Score: 464.55
Created: 23-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:Cyclothiazide (a positive allosteric modulator) binding site based on sequence similarity to other members of the iGluR AMPA family.
  • Structure:3DP4: Rattus norvegicus S1S2 glutamate binding domain of GLuR3 binds glutamate; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               #                     
3DP4_A     19 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 98  Norway rat
NP_990546 416 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLASEIAKHVGIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 495 chicken
NP_938174 412 NRTIVVTTIMEAPYVMYKknhmhlegnEKYEGYCVDLASEIAKHVGIKYRLSIVMdgkYGARDpetKSWNGMVGELVYGR 491 zebrafish
BAA37124  416 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 495 house mouse
AAI17465  422 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 501 human
P42263    422 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 501 human
AAF61848  422 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 501 human
NP_015564 422 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLAYEIAKHVRIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 501 human
CAA61680  416 NRTIVVTTILESPYVMYKknheqlegnERYEGYCVDLASEIAKHVGIKYKLSIVGdgkYGARDpetKIWNGMVGELVYGR 495 chicken
NP_938153 415 NRTIVVTTIMEAPYVMYKrnymqlegnDRYEGYCVDLASEIAKHVGIKYKLSIVAdgkYGARDpetKTWNGMVGELVYGR 494 zebrafish
Feature 1           ###    #                                                                  
3DP4_A     99 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT------------------------------------------- 135 Norway rat
NP_990546 496 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 575 chicken
NP_938174 492 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 571 zebrafish
BAA37124  496 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 575 house mouse
AAI17465  502 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 581 human
P42263    502 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 581 human
AAF61848  502 ADIAVAPLTITLVREEVIDFSKPLMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 581 human
NP_015564 502 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 581 human
CAA61680  496 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfgyigvsvvlflvsrfspyew 575 chicken
NP_938153 495 ADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQkskpgvfsfldplayeiwmcivfayigvsvvlflvsrfspyew 574 zebrafish
Feature 1                                                                                     
3DP4_A        --------------------------------------------------------------------------------     Norway rat
NP_990546 576 hledgseeprdpqnppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 655 chicken
NP_938174 572 qldetdevkdpqtppdppn-dfgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 650 zebrafish
BAA37124  576 hlednneeprdpqsppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 655 house mouse
AAI17465  582 hlednneeprdpqsppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 661 human
P42263    582 hlednneeprdpqsppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 661 human
AAF61848  582 hlednneeprdpqsppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 661 human
NP_015564 582 hlednneeprdpqsppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 661 human
CAA61680  576 hledgseeprdpqnppdppnefgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 655 chicken
NP_938153 575 hlddneetkdpqtppdppn-dfgifnslwfslgafmqqgcdisprslsgrivggvwwfftliiissytanlaafltverm 653 zebrafish
Feature 1                         #  ###                                                ##  # 
3DP4_A    136 --PIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 213 Norway rat
NP_990546 656 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 735 chicken
NP_938174 651 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFAKTTPDGVARVRKSkgkFAFLLESTMN 730 zebrafish
BAA37124  656 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 735 house mouse
AAI17465  662 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 741 human
P42263    662 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 741 human
AAF61848  662 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 741 human
NP_015564 662 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 741 human
CAA61680  656 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFTKTTADGVARVRKSkgkFAFLLESTMN 735 chicken
NP_938153 654 vsPIESAEDLAKqteIAYGTLDSGSTKEFFRrskIAVYEKMWSYMKsaePSVFVKTTPDGVARVRKSkgkFAFLLESTMN 733 zebrafish
Feature 1                           #                                         
3DP4_A    214 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 277 Norway rat
NP_990546 736 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 799 chicken
NP_938174 731 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 794 zebrafish
BAA37124  736 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 799 house mouse
AAI17465  742 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 805 human
P42263    742 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 805 human
AAF61848  742 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 805 human
NP_015564 742 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGEC 805 human
CAA61680  736 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 799 chicken
NP_938153 734 EYIEQRkpCDTMKVGgnLDSKGYGVATPKGSALRTPVSLAVLKLSEQGILDKLKNKWWYDKGEC 797 zebrafish

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