Conserved Protein Domain Family
PBP2_iGluR_kainate_KA2

?
cd13725: PBP2_iGluR_kainate_KA2 
The ligand-binding domain of the kainate subtype KA2 of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily.
This group contains the ligand-binding domain of the KA2 subunit of kainate receptor. While this ligand-binding domain is structurally homologous to the periplasmic binding fold type II superfamily, the N_terminal domain of kainate receptors belongs to the periplasmic-binding fold type I. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined.
Statistics
?
PSSM-Id: 270443
Aligned: 4 rows
Threshold Bit Score: 438.755
Created: 17-Sep-2009
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • None

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               #                     
CAC80547  414 NKTLVVTTILENPYVMRrpnfqalsgnERFEGFCVDMLRELAELLRFRYRLRLVEdglYGAPEpnGSWTGMVGELINRKA 493  human
ABA47261  414 NKTLVVTTILENPYVMRrpnfqalsgnERFEGFCVDMLRELAELLRFRYRLRLVEdglYGAPEpnGSWTGMVGELINRKA 493  crab-eating macaque
Q16478    414 NKTLVVTTILENPYVMRrpnfqalsgnERFEGFCVDMLRELAELLRFRYRLRLVEdglYGAPEpnGSWTGMVGELINRKA 493  human
CAF93734  388 NKTLIVTTILENPYVMRkdnyqdfqgnDQYEGFCVDMLREVADILKFSFKIKLVDdglYGAPEpnGSWTGMVGELINRKA 467  Tetraodon nigrovi...
Feature 1          ###    #                                                                   
CAC80547  494 DLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMgrkpgyfsfldpfspavwlfmllaylavscvlflaarlspyewy 573  human
ABA47261  494 DLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMgrkpgyfsfldpfspavwlfmllaylavscvlflaarlspyewy 573  crab-eating macaque
Q16478    494 DLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMgrkpgyfsfldpfspavwlfmllaylavscvlflaarlspyewy 573  human
CAF93734  468 DLAVAAFTITSEREKVIDFSKPFMTLGISILYRVQLgrkpgyfsfldpfspavwlfmllaylavscvlflaarlspyewy 547  Tetraodon nigrovi...
Feature 1                                                                                     
CAC80547  574 nphpclrarphilenqytlgnslwfpvggfmqqgseimpralstrcvsgvwwaftliiissytanlaafltvqrmevPVE 653  human
ABA47261  574 nphpclrarphilenqytlgnslwfpvggfmqqgseimpralstrcvsgvwwaftliiissytanlaafltvqrmevPVE 653  crab-eating macaque
Q16478    574 nphpclrarphilenqytlgnslwfpvggfmqqgseimpralstrcvsgvwwaftliiissytanlaafltvqrmevPVE 653  human
CAF93734  548 nphpclrenrdmlenqytlgnslwfpvggfmqqgseimpralstrcvsgvwwaftliiissytanlaafltvqrmevPIE 627  Tetraodon nigrovi...
Feature 1                                                                                     
CAC80547  654 SADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMwnymQSKQPSVFVKSTEEGIARVLNSrYAFLLESTMNEYHRRLn 733  human
ABA47261  654 SADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMwnymQSKQPSVFVKSTEEGIARVLNSrYAFLLESTMNEYHRRLn 733  crab-eating macaque
Q16478    654 SADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMwnymQSKQPSVFVKSTEEGIARVLNSrYAFLLESTMNEYHRRLn 733  human
CAF93734  628 SPDDLADQTNIEYGTIHGGSTMTFFMNSRYQTYQRMwnymKSKQPGVFVKSTEEGIARVVNSkYAFLMESTMNEYHRGLn 707  Tetraodon nigrovi...
Feature 1                                                        
CAC80547  734 CNLTQIGglLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRKWWE 784  human
ABA47261  734 CNLTQIGglLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRKWWE 784  crab-eating macaque
Q16478    734 CNLTQIGglLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRKWWE 784  human
CAF93734  708 CNLTQIGglLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRRWWE 758  Tetraodon nigroviridis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap