2V3U,2V3T


Conserved Protein Domain Family
PBP2_iGluR_delta_like

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cd13716: PBP2_iGluR_delta_like 
Click on image for an interactive view with Cn3D
The ligand-binding domain of the delta family of ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily.
This subfamily represents the ligand-binding domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this ligand-binding domain is structurally homologous to the periplasmic-binding fold type II superfamily, the N-terminal domain of iGluRs belongs to the periplasmic-binding fold type I. Although the delta receptors are members of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetical analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans.
Statistics
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PSSM-Id: 270434
Aligned: 16 rows
Threshold Bit Score: 440.433
Created: 27-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2V3U; the ligand-binding domain Of iGluR-delta2 binds D-serine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #                       
2V3U_A          2 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhkYGSPQedGTWNGLVGELVFKRADI 81   Norway rat
Q63226        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALSNYLGFNYEIYVAPdhkYGSPQedGTWNGLVGELVFKRADI 519  Norway rat
Q9ULK0        436 GLTLKVVTVLEEPFVMVaenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgrYGHQLhnTSWNGMIGELISKRADL 515  human
CAG10867      152 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGYSIDVLDALSNYLGFKYEIYVAPdhkYGSLQpdGQWNGLIGELVSKRADV 231  Tetraodon nig...
NP_001004123  440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhkYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
Q68Y21        440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhkYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
NP_060021     436 GLTLKVVTVLEEPFVMVaenilgqpKRYKGFSIDVLDALAKALGFKYEIYQAPdgrYGHQLhnTSWNGMIGELISKRADL 515  human
XP_426488     437 GLTLKVVTVLEEPFVMVaenilgqpKRYKGFSIDVLDALAKNLGFKYEIYQAPdgkYGHQLqnGSWNGMIGELINKRADL 516  chicken
NP_001096470  437 GLTLKVVTVLEEPFVMVaenilgqpKRYKGFSIEILDELSNRLGFKYEIYQAPdgkYGHQLsnGSWNGMIGELINKRADI 516  western clawe...
AAI62459      440 GVVLRVVTVLEEPFVMVsenvlgkpKKYQGFSIDVLDALANYLGFKYEIYVAPdhkYGSQQadGTWNGLIGELVFKRADV 519  zebrafish
Feature 1            ###    #            #                                                        
2V3U_A         82 GISALTITPDRENVVDFTTRYMDYSVGVLLRRGT---------------------------------------------- 115  Norway rat
Q63226        520 GISALTITPDRENVVDFTTRYMDYSVGVLLRRAEktvdmfaclapfdlslwaciagtvllvgllvyllnwlnpprlqmgs 599  Norway rat
Q9ULK0        516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 595  human
CAG10867      232 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvlligilvyllnwlnpprlpmgs 311  Tetraodon nig...
NP_001004123  520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
Q68Y21        520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
NP_060021     516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekisifslfapfdfavwaciaaaipvvgvlifvlnriqavraqsaa 595  human
XP_426488     517 AISAITITPERESVVDFSKRYMDYSVGILIKKPEekinifslfapfdfavwaciaaaipivgvlifvlnriqavraqnas 596  chicken
NP_001096470  517 AISAITITPERENVVDFTKRYLDYSVGILIKKPEerinifslfapfdfavwaciaavipvvgvlifvlnriqavraqnss 596  western clawe...
AAI62459      520 GLSALTITPERESVVDFTTRYMDYSVGVLLRKAErtvdmfaclapfdlslwaciagtvllvgtlvyllnwlnpprlpmgs 599  zebrafish
Feature 1                                                                                         
2V3U_A            --------------------------------------------------------------------------------      Norway rat
Q63226        600 mtsttlyns----------------------------mwfvygsfvqqggevpyttlatrmmmgawwlfalivissytan 651  Norway rat
Q9ULK0        596 qprpsasatlh------------------------saiwivygafvqqggessvnsmamrivmgswwlftlivcssytan 651  human
CAG10867      312 mssttlynsmwfvygsfvqqvgsfwsldlihrrqvtaqnlnafykcytcgevpyttlatrmmmgvwwmfalivissytan 391  Tetraodon nig...
NP_001004123  600 vssttlyns----------------------------mwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytan 651  zebrafish
Q68Y21        600 vssttlyns----------------------------mwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytan 651  zebrafish
NP_060021     596 qprpsasatlh------------------------saiwivygafvqqggessvnsmamrivmgswwlftlivcssytan 651  human
XP_426488     597 qpspsasstlh------------------------saiwvvygafvqqggestvnsvamrivmgswwlftlivcssytan 652  chicken
NP_001096470  597 qtsqstsstlh------------------------saiwivygafvqqggesaansvamrivmgswwlftlivcssytan 652  western clawe...
AAI62459      600 vssttlyns----------------------------mwfvygsfvqqggevpyttlatrmmmgvwwlfalivissytan 651  zebrafish
Feature 1                                          ###                                            
2V3U_A        116 ------------SIQSLQDLskqtdIPYGTVLDSAVYQHVRmkglnpferdsmy--sqmwrminrsngsENNVLESQAGI 181  Norway rat
Q63226        652 laafltitriesSIQSLQDLskqtdIPYGTVLDSAVYQHVRmkglnpferdsmy--sqmwrminrsngsENNVLESQAGI 729  Norway rat
Q9ULK0        652 laafltvsrmdnPIRTFQDLskqveMSYGTVRDSAVYEYFRakgtnpleqdstf--aelwrtisknggaDNCVSSPSEGI 729  human
CAG10867      392 laafltitrienSIQSLQDLskqteLPYGTVLDSAVYDQVRskamnpferdpmysqmwrminrtgggdgDNNVEESKEGV 471  Tetraodon nig...
NP_001004123  652 laafltisrienSIQSLQDLakqtdLPYGTVLDSAVYDQVRskgmnpferdpmy--sqmwrminrtggaENNVEESKEGI 729  zebrafish
Q68Y21        652 laafltisrienSIQSLQDLakqtdLPYGTVLDSAVYDQVRskgmnpferdpmy--sqmwrminrtggaENNVEESKEGI 729  zebrafish
NP_060021     652 laafltvsrmdnPIRTFQDLskqveMSYGTVRDSAVYEYFRakgtnpleqdstf--aelwrtisknggaDNCVSSPSEGI 729  human
XP_426488     653 laafltvsrmdnPIRTFQDLskqmdISYGTVRDSAVYEYFKakgtnpleqdntf--aelwrtisknngaDNCVSNPSEGI 730  chicken
NP_001096470  653 laafltvsrmdnPIRTFQDLakqvdLPYGTVKDSSVYEYFKskgtntlvqdrtf--aelwrtigknngsDNCVSSPSEGI 730  western clawe...
AAI62459      652 laafltisrienSIQSLQDLakqtdLPYGTVLDSAVYDQVRskgmnpferdpmy--sqmwrminrtggaENNVEESKEGI 729  zebrafish
Feature 1                                                                                         
2V3U_A        182 QKVKYGn------------------------------------------------------------------------- 188  Norway rat
Q63226        730 QKVKYGn------------------------------------------------------------------------- 736  Norway rat
Q9ULK0        730 RKAKKGn------------------------------------------------------------------------- 736  human
CAG10867      472 RKSEREevaycqglmdfwktqtamhhslqnrgesengfrvkpeergkrerhrrdrvqvkkmskdqfthlsgsfnvhsgev 551  Tetraodon nig...
NP_001004123  730 RKVKYGr------------------------------------------------------------------------- 736  zebrafish
Q68Y21        730 RKVKYGr------------------------------------------------------------------------- 736  zebrafish
NP_060021     730 RKAKKGn------------------------------------------------------------------------- 736  human
XP_426488     731 RKAKKGn------------------------------------------------------------------------- 737  chicken
NP_001096470  731 RKAKRGn------------------------------------------------------------------------- 737  western clawe...
AAI62459      730 RKVKYGr------------------------------------------------------------------------- 736  zebrafish
Feature 1                 ##                                                                
2V3U_A        189 ----YAFVWDAAVLEYVAINdpdCSFYTVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWP 258  Norway rat
Q63226        737 ----YAFVWDAAVLEYVAINdpdCSFYTVGntVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWP 806  Norway rat
Q9ULK0        737 ----YAFLWDVAVVEYAALTdddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  human
CAG10867      552 kyghFGFVWDASVLEYIANNdddCSFYTVSsnAPDRGYGIAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 625  Tetraodon nigroviridis
NP_001004123  737 ----FAFVWDAAVLEYVAINdedCSLYTVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish
Q68Y21        737 ----FAFVWDAAVLEYVAINdedCSLYTVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish
NP_060021     737 ----YAFLWDVAVVEYAALTdddCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWP 806  human
XP_426488     738 ----YAFLWDVTVVEYAALTddeCSVTVIGnsISSKGYGIALQHGSPYRDLFSQRILELQESGDLDVLKQKWWP 807  chicken
NP_001096470  738 ----YAFLWDVTVVEYAALTddeCSVAVTGntISSKGYGIALQHGSPYRDIFSQRILEFQDSGRLDVLKEKWWP 807  western clawed frog
AAI62459      737 ----FAFVWDAAVLEYVAINdedCSLYTVSnnVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILKLKWWP 806  zebrafish

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