2F34,3G3J,1YAE,1S50,2F36,1TXF,3C31,2WKY,1YCJ,2ZNS,3FUZ,3G3G,2I0B,3G3H,3G3K,3G3I,2XXR,3S9E,3U92


Conserved Protein Domain Family
PBP2_iGluR_Kainate

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cd13714: PBP2_iGluR_Kainate 
Click on image for an interactive view with Cn3D
Kainate receptor of the type 2 periplasmic-binding fold superfamily.
This group contains glutamate receptor domain GluR. These domains are found in the GluR proteins that have been shown to function as L-glutamate activated potassium channels, also known ionotropic glutamate receptors or iGluRs. In addition to two ligand binding core domains, iGluRs typically have a channel-like domain inserted in the middle of the GluR-like domain. Animal iGluRs mediate the ion flux in the synapses of the CNS and can be subdivided into several classes depending on the neurotransmitter specificity and ion conductance properties. Their plant homologs have been shown to function in light signal transduction and calcium homeostasis. The GluR proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270432
Aligned: 141 rows
Threshold Bit Score: 248.991
Created: 27-Nov-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingdimer interface
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1S50; Rattus norvegicus GluR6 binds glutamate, contacts at 4 A
  • Structure:2F34; Rattus norvegicus GluR5 binds Ubp310 (antagonist), contacts at 4 A
  • Structure:1YAE; Rattus novegicus GluR6 binds Domoic acid (agonist), contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   #                     
2F34_A          3 NRTLIVTTILEEPYVMYrksdkplygnDRFEGYCLDLLKELSNILGFLYDVKLVPdgkYGAQNd-kGEWNGMVKELIDHR 81   Norway rat
1S50_A          3 NRSLIVTTILEEPYVLFkksdkplygnDRFEGYCIDLLRELSTILGFTYEIRLVEdgkYGAQDdvnGQWNGMVRELIDHK 82   Norway rat
EEB19396      447 NVTLVVTTILEQPYVMMktkt---nssFALEGFCIDLLDAIANLVGFKYNISLVPdgkYGVYDyktGEWNGMVRQLIDKK 523  human body louse
NP_001036250  402 NVTLVVITILETPYVMMhygkn-ftgnERFYGFCVDILETISREVGFDYILDLVPdrkYGAKDpetGEWNGMVAQLMKYK 480  fruit fly
XP_002415471  323 NITLRVTTIESRPYVMMkdnkn-ltgnDRFDGFCIDLLRTIADLLGFNYELYLVPdkkFGVENtstGEWNGMVREIIDKN 401  black-legged ...
XP_966711     403 NITLVVMTREERPYVMVkdekn-ltgnARYEGFCIDLLKWIAGQVGFQYTIRLVPdhmYGVYDpdtKEWNGIVRELMEKR 481  red flour beetle
XP_966884     407 NVTLVVTTILEQPYVMLrtqtn-vvgnERYEGFCIDLLKEIASMVGFEYRIELVPdskYGVIDletGEWNGIVRQLMDKK 485  red flour beetle
EEC19136      323 NITLRVTTIESRPYVMMkdnkn-ltgnDRFDGFCIDLLRTIADLLGFNYELYLVPdkkFGVENtstGEWNGMVREIIDKN 401  black-legged ...
XP_001992924  365 NVTLVVITILETPYVMMrygkn-ytgnERFYGFCVDILETISHEVGFDYILDLVPdrkYGAKDpetGQWNGMVAQLMKYK 443  Drosophila gr...
EEB18839      410 NITLVVMTREERPYVMVrhdkn-ltgnARFEGFCIDLLRWISGQVGFNYEIRLVPdhkYGVLDqetKQWNGIVRELMDKR 488  human body louse
Feature 1               ###    #                                                                  
2F34_A         82 ADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGT------------------------------------------- 118  Norway rat
1S50_A         83 ADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT------------------------------------------- 119  Norway rat
EEB19396      524 ADLAVGSMTINYARESVIDFTKPFMTLGISILFKVPKnqaaqlfsfmnplalniwfyifaayalvsltllivarlspyew 603  human body louse
NP_001036250  481 ADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTseptrlfsfmnplaieiwiyvliayflvslciyivgklspiew 560  fruit fly
XP_002415471  402 ADLAVAPMTINYARESVIDFTKPFMNLGIGILFMLPSgmpvklfsfmspldvdiwlyvlaayilvsftmfivarsdgakt 481  black-legged ...
XP_966711     482 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKQSSksepsrlfsflnplamniwlymagayvlvsitiwivarfsple 561  red flour beetle
XP_966884     486 ADLAVGSMTINYARESVIDFTKPFMNLGISILFKVPTdkesaffsffsplgfdiwifvggaffmssftlftlarftpyew 565  red flour beetle
EEC19136      402 ADLAVAPMTINYARESVIDFTKPFMNLGIGILFMLPSgmpvklfsfmspldvdiwlyvlaayilvsftmfivarsdgakt 481  black-legged ...
XP_001992924  444 ADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTteptrlfsfmnplaieiwiyvlaayllvsitiyivaklspiew 523  Drosophila gr...
EEB18839      489 ADLAVASITINYARESVIDFTKPFMNLGIGILFKVPTsqptrlfsfmnplaveiwiyvlaayilvsftlfvmarfspyew 568  human body louse
Feature 1                                                                                         
2F34_A            --------------------------------------------------------------------------------      Norway rat
1S50_A            --------------------------------------------------------------------------------      Norway rat
EEB19396      604 qnphvcspannyvinpf--------------------------------------------------------------- 620  human body louse
NP_001036250  561 kcinacdlenisignqf--------------------------------------------------------------- 577  fruit fly
XP_002415471  482 srtkksrrytepqtrvll-------------------------------------------------------------- 499  black-legged ...
XP_966711     562 wkepelhehadgrtleilen------------------------------------------------------------ 581  red flour beetle
XP_966884     566 vypqpwkrskylvnqlsmsnsfwfiagtllrqpsgvnpqvptsqqarlfsfmnplamdiwmyvfsayvlvsitmfvvarf 645  red flour beetle
EEC19136      482 srtkksrrytepqtrvll-------------------------------------------------------------- 499  black-legged ...
XP_001992924  524 rsihpcdvehvtisnqf--------------------------------------------------------------- 540  Drosophila gr...
EEB18839      569 hnphpcqtdsdiienqf--------------------------------------------------------------- 585  human body louse
Feature 1                                                                                         
2F34_A            --------------------------------------------------------------------------------      Norway rat
1S50_A            --------------------------------------------------------------------------------      Norway rat
EEB19396      621 ----------------------tmgncfwftvgslmqqgsdlnprststrivgaiwwfftliiissytanlaafltverm 678  human body louse
NP_001036250  578 ----------------------sltdsfwftigtfmqqspdiypramstriisstwgffsliivasytanlaafltterm 635  fruit fly
XP_002415471  500 ----------------------ynlniffklscqkqlqscdlnpkamstrivgtiwwfftlilissytanlaafltverm 557  black-legged ...
XP_966711     582 --------------------gftignsfwfaigslmqqgsdlnpkatstrivggiwwfftliiissytanlaafltverm 641  red flour beetle
XP_966884     646 spyewhnphpcdmenelvenqfslansfwftigtlmqqgsdlnpkatstrivggiwwfftliiissytanlaafltverm 725  red flour beetle
EEC19136      500 ----------------------ynlniffklscqkqlqscdlnpkamstrivgtiwwfftlilissytanlaafltverm 557  black-legged ...
XP_001992924  541 ----------------------tisdsfwftlatlmqqgsdiypravstriissiwgffsliivasytanlaafltverm 598  Drosophila gr...
EEB18839      586 ----------------------svsnsfwfitgtflrqgsglnpkaastrivggiwwfftliiissytanlaafltverm 643  human body louse
Feature 1                                                                                         
2F34_A        119 --PIDSADDLakqtkIEYGAVRDGSTMTFFKkskistyekmwafmssrqqSALVKNSDEGIQRVLTTdYALLMESTSIEY 196  Norway rat
1S50_A        120 --PIDSADDLakqtkIEYGAVEDGATMTFFKkskistydkmwafmssrrqSVLVKSNEEGIQRVLTSdYAFLMESTTIEF 197  Norway rat
EEB19396      679 isPIENAEDLasqtdIKYGTLESGSTMAFFRdsmietyqkmwrfmenkkpSVFVSTYEEGIQRVLDGkYAFLMESTMLDY 758  human body louse
NP_001036250  636 inPIENAEDLasqteISYGTLDSGSTMTFFRdsvietykkiwrsmdnkkpSAFTTTYEDGIKRVNQGnYAFLMESTMLDY 715  fruit fly
XP_002415471  558 itPIESVEDLaeqskIAYGTLDSGSTMTFFRdskietyqk-mwrymenrpTVFVSTYEDGVARVLQGnYAFLMESTMLDF 636  black-legged ...
XP_966711     642 itPIESAQDLadqtdIAYGTLEGGSTMTFFRdskigiyqkmwrfmesrkpSVFVKTYEEGVQRVLEGnYAFLMESTMLDY 721  red flour beetle
XP_966884     726 itPIENAEDLagqteIPYGTLESGSTMTFFRdsmietykkmwrfmenrkpSVFVPTYEEGIQRVLEGnYAFLMESTMLDY 805  red flour beetle
EEC19136      558 itPIESVEDLaeqskIAYGTLDSGSTMTFFRdskietyqk-mwrymenrpTVFVSTYEDGVARVLQGnYAFLMESTMLDF 636  black-legged ...
XP_001992924  599 inPIENAEDLasqteISYGTLDSGSTMTFFRdsmietykkmwrimdnkrpQSFTSTYEDGIRRVNQGnYAFLMESTMLDY 678  Drosophila gr...
EEB18839      644 itPIENAADLaeqteISYGTLEGGSTMTFFRdskigiyqkmwrfmeskkpSVFVPSYDEGVKRVLDGnYAFLMESTMLDY 723  human body louse
Feature 1                                                                 
2F34_A        197 VTQRnCNLTQIGglIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWR 252  Norway rat
1S50_A        198 VTQRnCNLTQIGglIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253  Norway rat
EEB19396      759 ILQRdCSLIQIGgiLDNKGYGIGTPMGSPWRDKISLAILELQEKGEIQILYDKWWK 814  human body louse
NP_001036250  716 IVQRdCNLTQIGglLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWK 771  fruit fly
XP_002415471  637 MVQRdCNLTQVGglLDSKGYGIATPMGSPWRDKISLAILDLQEKGVIQMLYNKWWK 692  black-legged tick
XP_966711     722 AVQRdCNLTQIGglLDSKGYGIATPKGSPWRDKISLAILELQEKGVIQILYDKWWK 777  red flour beetle
XP_966884     806 TVQRdCNLTQIGglLDSKGYGIATPMGSPWRDKISLAILELQEKGEIQMLYDKWWK 861  red flour beetle
EEC19136      637 MVQRdCNLTQVGglLDSKGYGIATPMGSPWRDKISLAILDLQEKGVIQMLYNKWWK 692  black-legged tick
XP_001992924  679 TVQRdCNLTQIGglLDTKGYGIATPKGSPWRDKISLAILELQEKGDIQMLYDKWWK 734  Drosophila grimshawi
EEB18839      724 VVQRdCNLTQIGglLDSKGYGIATPKGSPWRDRISLAILELQEKGITQILYDKWWK 779  human body louse

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