Conserved Protein Domain Family
PBP2_FliY

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cd13712: PBP2_FliY 
Substrate binding domain of an Escherichia coli ABC transporter; the type 2 periplasmic binding protein fold
This group contains cystine binding domain FliY and its related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270430
Aligned: 10 rows
Threshold Bit Score: 351.303
Created: 1-Jul-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Neisseria Gonorrhoeae L-cystine ABC transporter.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #                                      #                ###     #      
P0AEN0     42 TLLVGLEGtYPPFSFQgd-dGKLTGFEVEFAQQLAKhlGVEASLKPtkWDGMLASLDSKRIDVVINQVtisdERKKKYDF 120 Escherichia coli W...
AEC21520   41 TLIVGVEGtYPPFNYVdtktGELDGFDIDVAKLIADklGVKVQFVKteWSAILAGLTSGKFDVIVNQVgitpGRQQTFDF 120 Pusillimonas sp. T7-7
CBW75358   54 TLRIGLEGtYPPFNFRda-hGELVGYDVDVAKAIALrlGVKPEFITteWSGIIAGLQAGKFDVIVNQVgitpVRQQTFDF 132 Burkholderia rhizo...
AAK23422   40 KLRVGLEGtYPPFNFQdk-sGQLAGFEVDFAKALAEqlGVKAEFSPapFAGLLGSLESGRIDVVINQItitpDRQAKYDF 118 Caulobacter cresce...
CAP19663   38 TLKVALEGnYPPFNFKdpktGELTGFEVDVAKLLAAklGVKPVFTTteWSGILAGLGAGKYDVIINQVgitdERQKAFDF 117 Herbaspirillum ser...
NP_902639  37 ALLIGLEGtFPPYSQLa--gGQLQGFEVDFGRALAAqmGVTARFQTmvWDHMLDSLAAGRLDAVINQVvatpARGKRFDF 114 Chromobacterium vi...
EEF25348   43 TLRIAMEGtYPPFNYKdkktGQLTGYDVEVARLLAArmGLKPEFISteWSAILAGLGAGKYDVIVAQVgitpKREATFDF 122 castor bean
AAG03703   31 ALRIALEGtYPPFNFKq--gGKLTGFETELGELLAAelAVKPEFVTteWSGILAGLQSGKYDIALNQVsvneQRRKVFDF 108 Pseudomonas aerugi...
AAF10144   37 TLKIAMEGtYPPFTSKne-qGELVGFDVDIAKAVAQklNLKPEFVLteWSGILAGLQANKYDVIVNQVgitpERQNSIGF 115 Deinococcus radiod...
EFV94072   44 TLRIGIEGtYPPFNYQde-kGQFVGFEIDLGNALAEtlGVKAQFQPtkWDGLLAALDSGRIDVIINQVtitdARQKKYRF 122 Lautropia mirabili...
Feature 1                                       #   ##                                   #    
P0AEN0    121 STPYTISgIQALVKKgnegtiktadDLKGKKVGVGlgtNYEEWLRqnvqgVDVRTYDddpTKYQDLRVGriDAILVDr-L 199 Escherichia coli W...
AEC21520  121 SVPYVASsPQLILRKnddagytsfaDLKGKKLGVSqgsNYEALAKsq-egVDVKSYPgapEYLSDLISKrvDAALNDq-L 198 Pusillimonas sp. T7-7
CBW75358  133 SQPYTYSvAQLIQRKddsrqfksldNLKGKKLGVSlgsNYNDMAKsv-pgIEVKTYPgapEYLRDLAAGriDAALNDr-L 210 Burkholderia rhizo...
AAK23422  119 SEPYTVSgIQIIALKgkpap-tgpeGLTGKKVGVGlgtNYEQWLRanvptADVRTYDddpTKYQDLRAGriDAVLNDr-L 196 Caulobacter cresce...
CAP19663  118 SDPYTLSsAQLIVRKdekrefksleDLKGKKLGLGqgtNFEQKAKav-pgIDVRTYPgspEYLADLAAGriDAALNDs-L 195 Herbaspirillum ser...
NP_902639 115 SIPYTYSgLQLVVRKpdltrfrgarDLAGAHVGVSagtNYEQWLRdnapqAHIHLYQddpTKFDGLRRGevDAIVINrlA 194 Chromobacterium vi...
EEF25348  123 SVPYTYSiPQLVVRNndttsykslaDLKGKKVGVGqgtVFEQQLKaappgIDIKSYPatpETLQDLAFGriDAALQDs-L 201 castor bean
AAG03703  109 SEPYTISsAQLIVRAdetrqfksleDLKGLKLGVGqgtNYADLAKsv-agVNVRTYPgapEYLQDLASKriDAALNDr-L 186 Pseudomonas aerugi...
AAF10144  116 SQPYAYSrPEIIVAKnntfnpqslaDLKGKRVGSTlgsNYEKQLIdt-gdIKIVTYPgapEILADLVAGriDAAYNDr-L 193 Deinococcus radiod...
EFV94072  123 SQPYTVSgIQAVTRTkdadtlqspnALAGKKVGVGlgtSYEEWARrtvpsAEVRTYEddpTKNQDLAVGrlDAVLVDr-L 201 Lautropia mirabili...
Feature 1                                                                     
P0AEN0    200 AALDLVKKtndTLAVTGeaf--srqESGVALRKgneDLLKAVNDAIAEMqkdGTLQALSEKWFG 261 Escherichia coli W3110
AEC21520  199 MTAYLVKTs--NIPIKGgaivgepkFNGIPFRKgnpGFEAALNKALQDSfdsGEFAKISNKWFG 260 Pusillimonas sp. T7-7
CBW75358  211 MLAYLIKTnalPLRPSStlg--qqeKVGIPFKKgnpKFAKAIDDAIAQLkadGTLPKISDKWFG 272 Burkholderia rhizoxinica HKI 454
AAK23422  197 VAADFVKTs-pEFVASGqpf--aaqGSGVAMQKd-pALKVVINQAINALranGKLAAISQQWFG 256 Caulobacter crescentus CB15
CAP19663  196 LVGYILKSt--NLPLKAgspigavdKIGIPFRKgnpEFKAALNKALADIkadGSFKAASEKWFG 257 Herbaspirillum seropedicae SmR1
NP_902639 195 AFNLALKSq-gELVPTGrvl--areDACVVLRKgnpRLLAEVNRAIGHLqrdGTLQALSRKWFK 255 Chromobacterium violaceum ATCC 12472
EEF25348  202 MVNYLVKNs--HLPLRGgarvgeisRMGIPFQKgnpKFKAALDKAIEDAradGSLKQLSMKWFG 263 castor bean
AAG03703  187 LIPFAIREaklPVKPGAavg--pvaNMAIPYRKnnpKFGEALNAALEKIkadGRFAKLSEKWFG 248 Pseudomonas aeruginosa PAO1
AAF10144  194 VVNYIINDq--KLPVRGagqigdaaPVGIALKKgnsALKDQIDKALTEMrsdGTFEKISQKWFG 255 Deinococcus radiodurans
EFV94072  202 AALYQVKQsknRFALGGpaf--srqTSGIPTRKsdeSLHQAIDQALEKLradGTLTKLSNKWFD 263 Lautropia mirabilis ATCC 51599

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