Conserved Protein Domain Family
PBP2_HisK_like_1

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cd13706: PBP2_HisK_like_1 
Putative sensor domain similar to HisK; the type 2 periplasmic binding fold protein
This group includes periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270424
Aligned: 68 rows
Threshold Bit Score: 221.666
Created: 12-Mar-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAN55468   27 TESLIVVMGeDSFPYQFVDndgeATGLLVDLWKEWGKRThTPLVFVARhWNESLAQLQQGkAQVHIGMgKTPEREqrFDF 106  Shewanella oneide...
ABO23946  254 ANTLVIATTtGIQPFVDTGgdgePHGLYIDIWKLWSKKTgIEVEFRPAaMEDGLDELKFHrADIHVGYpESDTMKtnLTR 333  Shewanella loihic...
ABV36638  251 KRGITVATTlNIEPFVSLGgdglPHGLYVDIWHLWSEKTgIPVFFSTGdMNSSLDDVRMGsADVHIGYpESDALKsgLLR 330  Shewanella sedimi...
ACE83573   48 PRTWYVVQDhSWAPLAFRDrhgePQGLIVDLWKLIGTKTgRPVQFELLdWQHTLHRVKGSrEAIHGGLlESPERRayLDF 127  Cellvibrio japoni...
ABE55171  257 TTGIVIAGQaGVEPFMDLGpdgqPYGMFIDIWRLWSTKTgINIEFLASnMTDSITDVRQGnADVHMGYpESHELNsgLKQ 336  Shewanella denitr...
ABV87687  241 QNDIVIAMQmGVEPFADIGtdgfPHGLLIDIWKLWSEKTgLPIRFVAGsMKQSIDNVKRGiADVHLGYpESASMQtgLNR 320  Shewanella pealea...
ABM00050  249 QSGLAIAMQlGVEPFVDLGgdgqPHGLYVDIWRLWSEKTgIPINFIPGdMNGSLEDVRSGrADVHIGYpESDDMNtgLYR 328  Shewanella amazon...
ADC72241   29 PPPLIVSQDhAWPPFAFEDnggePRGLLVDLWQEIANELdRPVEFRLVdWPRTLDLVRGGeADVHGGLiQSPEREqtLAF 108  Thioalkalivibrio ...
ADU63860   40 PGQMIIAHDaGYPPFCFLDqdgePTGYLIDLWRAFGRENdIEITFLLGtWQQSLDMVMDGrADVHGGLvHSNDRDrvFDF 119  Desulfovibrio aes...
NP_718024 253 KPGIVVAMQlGVEPFVDLGvdglPHGFYVDLWRLWSAKTgIDINFISGdMNGTVNDVRQGlADAHIGYpESDDMKtgLTR 332  Shewanella oneide...
AAN55468  107 ADAIANVs-TYLYLHKSlqgkknikELIPYQVGIVSgsSHEAELRRlepglVFKYYQSReTLLAGVAAGETVVFAGLDgY 185  Shewanella oneide...
ABO23946  334 AWRTYQVk-SRLFSYGKain--sldELKGKRVGAVPtaPYLDKLKQalpnsELKLYTDVtQMIQAAQQGHIAAFVAASaW 410  Shewanella loihic...
ABV36638  331 SQLLYKVk-SRLFSFGHsid--nldALAGTLIGAVPtsPYLGKLKQavpntQLKLYDSVaSMIQAAREGHISSFVASSaW 407  Shewanella sedimi...
ACE83573  128 SNPLFQLr-TALFVNARslrqvlepADLTQPIGITAggFEEEFMRKhhpalALRLYNNNrALVEAAVRGDVDAFVADYpV 206  Cellvibrio japoni...
ABE55171  337 AWQIFSLk-SRLFMHKSpln--nkaELKGMRIGVFPtaPYLSQITAqlpgvHIKFYDSLgLMIDAANKGSISGFIASGaM 413  Shewanella denitr...
ABV87687  321 AHTIYRVt-SRLFSFEKplq--nvdELKGKVVAVSPtsPYLSELIDtlpesEIRYYHSVdSMIEASQRGEISAFVAAAaW 397  Shewanella pealea...
ABM00050  329 AWHMYTIk-SRLFLYGDqsh--dldALKGKRLGVFPtaPYVAALKAalpntQIRFYQGMdEMLTAVHQGDIVGFVAAAaW 405  Shewanella amazon...
ADC72241  109 SEVLLPLr-TFAFVRTGapva-rldELAHKPAGVVAgsFELEFMRRerpehPLQVFDNNeQMVRAALEGTIDVFVGDYpV 186  Thioalkalivibrio ...
ADU63860  120 GPELIELs-THLFVRNGf------dARQTQPVGVVRggYEEDFMRAnrpttRLVLFDDNmTMVRAATDGHIPAFVADSpT 192  Desulfovibrio aes...
NP_718024 333 AWQLYTVksRLFLYQQQltd---llSLKGKRIGVVPtaPYLVSLRKalpdvAFRYYDNMdAMVAAARAGEIIGFVAAGaW 409  Shewanella oneide...
AAN55468  186 LRDPASNqtiavNYPLNIripikamQFVPAVMKg-nTELLNKIKAGFNGFDpKFIQQTERRWL 247  Shewanella oneidensis MR-1
ABO23946  411 TQHYLLRaeswsDFHQYRkla--ftTDIYALTRnedKGLAQRIAAGFRLISnAELAAIENKWI 471  Shewanella loihica PV-4
ABV36638  408 TQHYLVLnhawsEFHQFDdle--feTDIFVLTRpenVGLDKRIKAGFELIGqNELAEIEQKWM 468  Shewanella sediminis HAW-EB3
ACE83573  207 GMFYLDRfttpdQFRVLSvly--srPIHAAVARg-nSASLDEINRALNDISpEEMTRLTQKWI 266  Cellvibrio japonicus Ueda107
ABE55171  414 TTHHLLKnkiwaDYHQFDgld--feTQMYSLTRledSGLADRIKAGFMLINhKELAQIEQKWL 474  Shewanella denitrificans OS217
ABV87687  398 TQHYLLLnhnwdQFYQYMale--fkTDLYVLNRgsqQGFADRISAGFTLISqSELAQIERKWM 458  Shewanella pealeana ATCC 700345
ABM00050  406 TQHYLLLnrswsEFHQVPsle--fdTEIYALIRqgdQGLANRIASGFNMIDwKELADIEQKWM 466  Shewanella amazonensis SB2B
ADC72241  187 AMYLLDRhgepgMFHPLElly--eqPLRAAVTHa-nEELLDEINTAIAQLDdELLRQITQRWI 246  Thioalkalivibrio sp. K90mix
ADU63860  193 VSYCLGLygarsDFAVSDliy--rkPLQAAVCEg-rHDTLDLVNYGWARMDqKTLTRIHGKWF 252  Desulfovibrio aespoeensis Aspo-2
NP_718024 410 TSHYLLQnkawaDFHQYPele--fpTEIYVLTRsddPGLTQRITNGFRSISmQEFADVEQKWM 470  Shewanella oneidensis MR-1
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