3H7M


Conserved Protein Domain Family
PBP2_HisK

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cd13704: PBP2_HisK 
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The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein
This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270422
Aligned: 66 rows
Threshold Bit Score: 163.524
Created: 18-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H7M_A         10 HRTIVVGGDrDYPPYEFIDqngkPAGYNVELTRAIAEVMgMTVEFRLGaWSEMFSALKSGr--VDVLQGIs-WSEKRArq 86   Geobacter sul...
ACE85708       32 PESVLFGGDaAYPPLEWMEhn-qARGFNVELARELARIGgRRATHRLGnWPDTVAALERGe--LDVVPMY--YSPERAqr 106  Cellvibrio ja...
Q02482         18 QDSIVFGVHsKTAPLEWRNng-vDQGFNIELMDRIGQLTnKRIIVRRKsFQQLVKDVHDPdsdIDVIAVVspVNMDRK-- 94   Shewanella fr...
YP_011622      39 TSRPVIATAdPWPPYADPAh--pAHGLTLEILSLALGRSgYTVTMVYLpWVRAEQRLERGg--VDLLINCw-RTEARAkr 113  Desulfovibrio...
NP_762760      18 HAATITAAQdPWAPFVQQNn--aNPGISVEIVIEAFKTQgHDVDFKIMpWTRALNEVKDGr--VDVLVATw-FTQERTsy 92   Vibrio vulnif...
ADQ08285       27 HTPVKFEVDkSYPPFSYTSdg-rIYGFAIDLANLVFEADkFKLELSSDtWNQVYKKLAEGk--IDVTAPVa-IVEERKke 102  Caldicellulos...
YP_001178872   26 HKTIKFQVDkQYPPFSYVIng-rVYGFSGDLANLIFEPDkYFLSVSSDtWENVYKRLVSGe--IDITGPIv-ILEERKkd 101  Caldicellulos...
EGB14139       23 DAPFHCGMArGYPPYQFLNdagePTGLDMEVAELVFARLgIKARMVPGiWDDVVASLRLGr--LDCVIGMe-INSERRpf 99   Desulfovibrio...
ABQ13928       19 ADKYRVASHpTFAPYEFLDgngiITGYDVDLIQEIAKDQgFEVEIHNDkWEELLDKLNDGk--RDMIVSSlmDTEERRql 96   Dichelobacter...
YP_001094703   27 TPAARCGVAtGFPPYQFSAgg-eTTGFDADVARLIFKRLgMPFQFRQQaWDLVFNELRFGd--IELIAGMe-INALRTkf 102  Shewanella lo...
3H7M_A         87 IDFTPPHTIVy-HAIFARRDsppa-agleDLRGRKVALHRd-gIMHEYLAErgy--gkDLVLTPTPaDALRLLAAGGCDY 161  Geobacter sul...
ACE85708      107 FLFTTPYYYSs-HAIYALEDaprl-tsveQLAGKRVAVEEa-sFAHQQFLAsdh--ppRLQLTTNTlAAIQAVAQGQADY 181  Cellvibrio ja...
Q02482         95 LAQSDPIYATh-AKAYTLQGkali-nnwaDLVGKRVAIKNg-aFVDVFLSDhlq--nfDRVDVDLYeTGFQLLIKNQVDV 169  Shewanella fr...
YP_011622     114 YLFSRPFARNr-LLFMQRAGesfvfagqeSLKGKTVGTIRgygYTDAFMADts----iRREEVTNFkDNVRKLVSGRVDL 188  Desulfovibrio...
NP_762760      93 LNYSQPYLENs-LKFIKRSGdgfeyngmdSLSGKNVGIIRnygYGDEFLKAtn----fNKPEANDLvANAKKLLAKRIDL 167  Vibrio vulnif...
ADQ08285      103 VYFSKPIFTRh-VGIYTPKGfskn-islkNLESFKVGVMKs-dYTETLLKEklg--inKYYTYPTIeDLIYALVDGKIDA 177  Caldicellulos...
YP_001178872  102 VYFTDPIFTRh-VGIYTRKDfnkv-itvnNLASFKIGVMKs-dYTETLLKErlk--ikNYLTFQTIeDEFVALLEGKVDA 176  Caldicellulos...
EGB14139      100 FEFTSPYYNRr-VVVFVNRDdqgi-rtvdDLVLKAVAGDRh-sFVERYLRQrglldsiRIVKTRSKdQSMRMLKEGKVVA 176  Desulfovibrio...
ABQ13928       97 ADLSKPYSEYeqFTVFYKRPdlsi-nslsDLSGLNAGAEKg-tANVERLKQag----aNVTELDSNfEGFKAIIRGSIDA 170  Dichelobacter...
YP_001094703  103 FDFTRPYYYRydVIFILEDNqqit--kleDLHNQFVSGDRh-sYIETHWKElgtlydfRIIATPSKeRSMQLLKEGKIQA 179  Shewanella lo...
3H7M_A        162 AVVAMvPGMYIIREnr---ltNLVPVArsi--aaqRYGYAVRQg-dAELLARFSEGLAILRktGQYEAIRAKWL 229  Geobacter sulfurred...
ACE85708      182 AVLASlATERLLRDhq----yPLRRMGppf--waqGYAFAINRh-kPEIAAWLQGALNTAMasGRYQELYQDWS 248  Cellvibrio japonicu...
Q02482        170 VIAESfVARRLLPLy-----pSVRSSSdal--iygAFNFVANEt-kTELMYQINEALRQLKlsGEYDKLVNKWF 235  Shewanella frigidim...
YP_011622     189 IIEDElVARTQLEQlpadlagQVAFIEpplvtndlYVVAYPDNpgaQDIIRAFDAGLAAMIadGSYKALMERYD 262  Desulfovibrio vulga...
NP_762760     168 TLEDElVAKATLSGagm-klsDFDFTNnalsvnplHVTSGLANaknGEIIEAFNKGLAEIKanGTFDKILMKYG 240  Vibrio vulnificus C...
ADQ08285      178 ALMSQeVANYFLVKndlsdraELKIKNif----tvKSAFAVSKk-rPELVLYINQRLNFLTnkGIFDELYYNYF 246  Caldicellulosirupto...
YP_001178872  177 VIISQeIANYFLVKnny--adQVEIKLkdi--filESGFGISKr-rPELVGYVNARLKELIknGIFDQLYYNYF 245  Caldicellulosirupto...
EGB14139      177 VIAPLaVGRLLAERya----lPVRVIDvgd--pgsPVGFAVVKg-nSELRRKLDDALQGLKaeGALQPVLDRWL 243  Desulfovibrio sp. N...
ABQ13928      171 YYCDEaSMAYILRGyk---dkKLPIRTfrlpkepgKTVIAVKKg-nAELLEKINRGIDNLRanGKLDELRKKWL 240  Dichelobacter nodos...
YP_001094703  180 AIMPKaVGLYLAQQmg----iEVKILDnpd--pgsPVAFAVKRg-nHQLLVQIDEALEALIseGEIQRLYEKWF 246  Shewanella loihica ...
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