Conserved Protein Domain Family
PBP2_ml15202_like

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cd13701: PBP2_ml15202_like 
Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold
This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which are involved in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270419
Aligned: 5 rows
Threshold Bit Score: 383.736
Created: 15-Mar-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to ABC-type histidine/lysine/arginine/ornithine transporters.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #   #                                     #                # ##    #    
NP_105905  24 ADPVKIGVAaePYPPFTSPDAsGKWVGWEIDFIDAVCAEEKLDCVITPVAWDGIIPALTTKKIDLIVSsMSITDERKkTI 103 Mesorhizobium loti...
YP_262100  24 ADKIVFGIAlePYPPFSMKSGnGDWSGFEPELIKALCDRMQAQCPLKEVAWDGLIPALQSSQIDAILNsLSITDEREkVI 103 Pseudomonas fluore...
EAY67111   76 QPTLRVGIDaeSYPPFFSKDAgGKWKGWEIDVLDAACGKLNVRCELTDIAWDGLIPALQNHKIDVIWSsMTITGERQkAI 155 Burkholderia cenoc...
EGP19453   23 ADSYKIGLSaePYPPFYSPDAsGNWSGWEIDFIEELCVRLDAECEISPVAWEGIIPALKTGKIDMIIGsMSITPERAeQI 102 Halomonas sp. TD01
YP_572595  28 DEPLKIGISaePYPPFTYKDAdGSWTGFEVELGQAICAQMDAACEITPTGWSGIFPALNSGKIDMIMNsLSITEKRKrVI 107 Chromohalobacter s...
Feature 1                                           #  ###                                    
NP_105905 104 DFSDKYYNTPTAIIGPkdqkfgat---pddlkgkVVGVQVSTVHAVYAKKHFgstasEIKEYQtQDEANQDLAAGRLDAV 180 Mesorhizobium loti...
YP_262100 104 DFSAPYYQTPAMWVADqslelvtt---peglkgkLIGVQGSTSNATFAKTYYgk-tsTLRYYTtQDDMIADLQSGRIDVM 179 Pseudomonas fluore...
EAY67111  156 DFSRAYYESPTVFVGAksdrrrvdcavpatfkgsVIGVEAGTNFSAFLDARFkq-daQIKAFDkFDNALADLVSGRVDYV 234 Burkholderia cenoc...
EGP19453  103 SFSNKYYSSPTGIVARkstdidpt---peslegaYLGIQSGTNQEQYARKHYad-saNLNVYQtLNEELQDLVAGRIDAI 178 Halomonas sp. TD01
YP_572595 108 AFSDPYYFTPSAYVTAkandmqi----pedldgkILGVQGSTTNATFARRSLadtgvELKVYDqQEQANRDLLAGRVDAI 183 Chromohalobacter s...
Feature 1       #                                                                      
NP_105905 181 QADsIALGEFLksdqgkACCDLKGMVApddevlgpGVGAGVRKEDtDLKEKINAGIKAIRsNGKYDEISKKYF 253 Mesorhizobium loti MAFF30...
YP_262100 180 LADaLTIEPILkta-agAGLADKGLAPkdpl-fgsGIGVGLRKGDsALQQRINTALASLKaDGTYDKIRSRYF 250 Pseudomonas fluorescens Pf-5
EAY67111  235 QEGkGLFTAFLasr-dgKDFEVKATCAdnpv-lglGIGAGVRRGD-ALRGKLSTAIAQLQrDGTWDAITARYP 304 Burkholderia cenocepacia ...
EGP19453  179 VADsLAVQTFInsetgqSCCEYRGEVAsdpelmseGMGVGLRQSDtELRERVNTAIDAMRaDGTYEEISAPYF 251 Halomonas sp. TD01
YP_572595 184 LADeIAMTEFVerd-saQDFEIRAIAPrdda-fgnGVGIGLRQEDdALRDKLNAAIASVLdNGRCAELSQQYF 254 Chromohalobacter salexige...

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