1XT8,1XT8,2YJP


Conserved Protein Domain Family
PBP2_Cysteine

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cd13694: PBP2_Cysteine 
Click on image for an interactive view with Cn3D
Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold
This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270412
Aligned: 13 rows
Threshold Bit Score: 327.001
Created: 5-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingdimer interface
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1XT8; Campylobacter jejuni cysteine-binding protein in complex with cysteine, contacts at 4 A.
  • Structure:2YJP; Neisseria Gonorrhoeae cysteine-binding protein in complex with cysteine, contacts at 4 A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #  #                                            #              #  
1XT8_A        37 LDKIKQNGVVRIGVFgDKPPFGYVDekGNNQGYDIALAKRIAKel-fGDENKVQFVLVeAANRVEFLKSNKVDIILANft 115 Campylobacter j...
1XT8_B        37 LDKIKQNGVVRIGVFgDKPPFGYVDekGNNQGYDIALAKRIAKel-fGDENKVQFVLVeAANRVEFLKSNKVDIILANft 115 Campylobacter j...
2YJP_A        48 VAAIKEKGVIRIGVFgDKPPFGYVDanGKNQGFDVEIAKDLAKdl-lGSPDKVEFVLTeAANRVEYVRSGKVDLILANft 126 Neisseria gonor...
YP_001406034  13 LEEIKQSKVIKIGVRlNLPPFSNQNehGEFEGFEISLAKAIGAsi-lGKNGEIQLVGLnAKDRIPYLQNGTVDLILANfs 91  Campylobacter h...
NP_695307     56 LDEIKKSGKIKIAVFsDKAPFGYVDkdGKYQGYDVYFAEQLAK----DLGVEPEYTSVdPAARVDVLTSNKVDLVLANft 131 Bifidobacterium...
AAD26123      38 VAQIKEKGVIRIGVFgDKPPFGYVDanGKSQGFDVEIAKEIANdl-lGSSDKVEFVLTeAANRVEYLKSNKVDLILANft 116 Actinobacillus ...
AAD10862      38 IKQIKKSGKIKIAVFgDLKPYGWVDknGKRQGYDIELAKKIAK----DLGVKVKYVQVnANARVDALNSGKVDLALANft 113 Leuconostoc lactis
YP_001406796  20 LDQIKQKGVFRVGVYeSQPPFEKFVd-GKFEGFEIDLANSIAKdlfgENGGTVEFVIItAKDRIPALQQNKIDAVIANyt 98  Campylobacter h...
YP_520920     29 LEEIKQRGTLRIGVFsDKPPFGYVDanGQNQGFDVEIARRFAKdl-lGDESKVEFVLVeAANRVPYLESNKVDIIMANft 107 Desulfitobacter...
EDK88120      48 VQEIKDSGVIRIGVFtDKAPFGYIDenGKNQGYDVYFTDRLAK----DLGVKVEYISLdPASRVEYAETAKADIVAANft 123 Fusobacterium n...
AAK08611      56 PKAIKDAGIIRIGVKcDSPPFGASGtdGKPAGIEIDIAKQIGIaa-fGSANKAELSCVaTDARIPSLTGGKIDLIIATlg 134 Agrobacterium t...
YP_001526786  66 PELITSQGVLRAGVRcDQPPYGFQDgsGAFAGVETDMARQIADwi-fGSKDKVEFTCVtAENRIPQLTGKRVDLLIATlg 144 Azorhizobium ca...
AEB14923      34 VEQIKKSGEIKIAVFsDKKPFGYVDeyGEYQGYDVYFGNRIAK----DLGVKVKYVPVeAASRVEFLVTGKVDIVLANft 109 Treponema succi...
Feature 1            #                                         ##                                
1XT8_A       116 QTPQRAEqVDFCSPYMKVALGVAVPkdsnitsveDLKDKTLLLNkGTTADAYFTQNyp--niKTLKYdQNTETFAALMDK 193 Campylobacter j...
1XT8_B       116 QTPQRAEqVDFCSPYMKVALGVAVPkdsnitsveDLKDKTLLLNkGTTADAYFTQNyp--niKTLKYdQNTETFAALMDK 193 Campylobacter j...
2YJP_A       127 QTPERAEaVDFADPYMKVALGVVSPknkpitdmaQLKDQTLLVNkGTTADAFFTKShp--evKLLKFdQNTETFDALKDG 204 Neisseria gonor...
YP_001406034  92 KTEERAKsVDFATPYLSNTQGILTKksenirsisQLAGKKILFIkGTTTDDYLKANaaklgiTPVECqSVNKCFQSLQKG 171 Campylobacter h...
NP_695307    132 VTDERKEkVDFAKPYMKVALGVVSPesaqitdvsQLDGKTLIIAkGTTAETWFEKNap--nvKLQKYdQYADAYNALLDG 209 Bifidobacterium...
AAD26123     117 KTPERAEvVDFAAPYMNVALGVVSPkvrlisdlkQLEGKTLLVNkGTTADAYFTKNhp--eiNLLKFdQNTETFDALKDG 194 Actinobacillus ...
AAD10862     114 VTPERKEvISFAKPYMKVSIGVASKktnlitkvnQLKGKNLIVNkGTTAETYFTKEyt--saKLLKFdSKTQQFAALKDG 191 Leuconostoc lactis
YP_001406796  99 VTDERAKsVDFTMPYFAVNTGILTRkndnitsplELRDTPIICEkGTTTEEYLQKNd----fKIEYCnSAVECYKMVRDG 174 Campylobacter h...
YP_520920    108 VTEERKQkVDFANPYMKVALGIVSPdgalitsidQLQGKKVIVNkGTTAQDYLTKNhp--dlELLKYdQNTEAFEALKDG 185 Desulfitobacter...
EDK88120     124 VTPERAEkVDFSLPYMKVSLGVVSPdkaviksidELKDKTLIVSkGTTAEYYFSKNhp--eiKLQKYdSYADAYNALLDG 201 Fusobacterium n...
AAK08611     135 KTPSREQvIDYSNIYYWGSSRVIVPkeskvqklaDLDGKSMLIIkGGSQLKWLKERip--tlEFIQLnTNADNLQALQQG 212 Agrobacterium t...
YP_001526786 145 VTPERQRvIDFSIPYRWGASGLLVRadspfqkvaDLDHHTVVMPkGTVQAKWFEDMmp--gvKTLRLnTAADSLQALKQG 222 Azorhizobium ca...
AEB14923     110 VTPERAEkVDFALPYMKVALGVVSPesalvtkpeDLIGKKLIISkGTTAETYFTKNyp--evELLKFdQYAEAYSALLDG 187 Treponema succi...
Feature 1              ##                          #                                     
1XT8_A       194 RGDALSHDntLLFAWVKdhpDFKMGikelgnKDVIAPAVKKGDkELKEFIDNLIIKLgqeQFFHKAYDETLK 265 Campylobacter jejuni
1XT8_B       194 RGDALSHDntLLFAWVKdhpDFKMGikelgnKDVIAPAVKKGDkELKEFIDNLIIKLgqeQFFHKAYDETLK 265 Campylobacter jejuni
2YJP_A       205 RGVALAHDnaLLWAWAKenpNFEVAignlgpAEFIAPAVQKGNaDLLNWVNGEIAAMkkdGRLKAAYEKTLL 276 Neisseria gonorrhoeae F...
YP_001406034 172 EADGYMHTsiLIAFLQLlddNIEMGiqnigsIEFICPGVKKGNeALLEAVNASIYNLsksNFFKDAYNNTFE 243 Campylobacter hominis A...
NP_695307    210 RGDAFSTDntEVLAWAKsnkGFKVGithlgdDDTIAPAVQKGNtELLNFVNDEIVKLgkdNFFHKDYQETLE 281 Bifidobacterium longum ...
AAD26123     195 RGVALAHDnaLVWAWAKenpTFDVAigsvgpAEQIAPAVQKGNqALLDVINKEIAEFktnGKLKAAYEKTLV 266 Actinobacillus pleuropn...
AAD10862     192 RADAITDDnsYLFAWVKdhpDYKVGikqlgeQSYISPGVQKGNkSVLKWTNKEIKKLnksNFFKKDYKKTLA 263 Leuconostoc lactis
YP_001406796 175 KAKAYAADniVVLAYPVldrSVEVSiknlgtTDFLAIGVQKGNkTLLDFINDELIKLskeGFFKKSFNETIQ 246 Campylobacter hominis A...
YP_520920    186 RGAALAHDntEVLAWAKsnpGFTVGvpalgsTDTIAPAVKKGDtELLNWINQELAELakeNFVRKAYEKTLL 257 Desulfitobacterium hafn...
EDK88120     202 RGDAFSTDntEVLAWAKanpGFTVGidslgdVDTIAVAVQKGNkDLLDWINNEIKELgkeNFFHEAYKATLE 273 Fusobacterium nucleatum...
AAK08611     213 RADGYVGDaiTIATLASsypQFRALeep-vdLGFNGVGIRKGEdELKAFVNGVLKKLkdeKFYSKTVPTYVK 283 Agrobacterium tumefaciens
YP_001526786 223 RADGYAHDaaTLVVAAAqdkSLRLLndp-yqTSEVSIGLRKDEpTWKTYLDAAVERMhaeKLFRVWVEKYVS 293 Azorhizobium caulinodan...
AEB14923     188 RGAGMSTDntEVLAWALenpGYKVGieslgeLDTIAAAVQKGNtSLLEWINNEIVELgkeNFFHADYEATLR 259 Treponema succinifacien...

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