2V25


Conserved Protein Domain Family
PBP2_Peb1a_like

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cd13691: PBP2_Peb1a_like 
Click on image for an interactive view with Cn3D
Substrate binding domain of an ABC aspartate/glutamate transporter; the type 2 periplasmic-binding protein fold
This group includes periplasmic aspartate/glutamate binding domain Peb1a and its closely related protein. The Peb1a is an important virulence factor in the food-borne human pathogen Campylobacter jejuni, which has a major role in adherence and host colonization. The Peb1a domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270409
Aligned: 7 rows
Threshold Bit Score: 338.273
Created: 1-Jul-2009
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingdimer interface
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2V25: Campylobacter jejuni antigen PEB1a, an aspartate and glutamate receptor binds aspartate; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #                                            #              #  
2V25_A      3 LESIKSKGQLIVGVKnDVPHYALLDqatGEIKGFEVDVAKLLAKsilGDDKKIKLVAVnAKTRGPLLDNGSVDAVIATft 82  Campylobacter jejuni
NP_721864  36 VKKIKRAGVLKVGVKqDVPNFGYYNaetGKYEGMEIDIARKIAK---SIGVKLELVPVtTQTREPLMDNGQVDLVIATyt 112 Streptococcus muta...
AEC02612   37 VDKIKSRGVLNVGVKvDVPGFGYKDistGANVGFETDLARQIAKvilGDASKVSFTPVtAKTRGPLLDTGELDIVIATft 116 Spirochaeta coccoi...
ACV55104   28 AGCAGGADVLRVGTKiDVPGFGFQNpetGNIEGMEVDIARELAKrikGSPDALRVTGVnVTTRGAMLDNGTLDATLATft 107 Eggerthella sp. HGA1
EEG73883   32 CGGREKSGTLRVGVRdDIMNFGYLNketGRYYGMEIDLANKLAEk--LGYEEVEFVTVqPDNRKEMLQEGKVDCLVAAys 109 Clostridium hylemo...
ADB47166   46 IAAIKKRGVLRVGVKnSTKGFGYQDpatGKFTGLEVDLGEALAK---KLGVDVEYTPVtAATRTALLDSGDIDMVAATft 122 Acidaminococcus fe...
CBK98524   55 TQAIVDRGVLKVGVKnAVKGFSFQDtltGEYKGLEDSLAEMIAE---HLGVDVEFTTVtAATRGELLDSSDIDAVLATft 131 Faecalibacterium p...
Feature 1         #                                         ##                                
2V25_A     83 ITPERKRiYNFSEPYYQDAIGLLVLkekkykslaDMKGANIGVAqAATTKKAIGEAakki------------------gi 144 Campylobacter jejuni
NP_721864 113 ITPERQAsYSISKPYYYDQIGFLVRqsskiskisDLDGLTIGVSqGATTKVNLEAYakkh------------------hl 174 Streptococcus muta...
AEC02612  117 VTEERKLsYEFSTIYYTDAVSLLVKksggykslkDLDGKTIGVAqSATTKAVLETEaknq------------------gi 178 Spirochaeta coccoi...
ACV55104  108 ITEARKKsYNFSRPYYTDHIGVLVKkssgivdlkDLDGKTVGVAlSATTRDKLTAAgdei------------------gi 169 Eggerthella sp. HGA1
EEG73883  110 IADTRKEnFDFSPPYYTDETVIMAEksalfhsadDLKDQTVGIVsGSNAGPLLAQKlydlgiitdkvv--sntdtatvye 187 Clostridium hylemo...
ADB47166  123 ITPERKKsWDFTTPYYTDHVGVLVEkasninslaDLKGKVVGVSsGSTSAKALVEAmikakvidgegfdpknfdaatwtk 202 Acidaminococcus fe...
CBK98524  132 ITEERKKtWDFSTPYYTDYVSVLVEdstgikglaDLKDKVVGVSsGSTSARALVKAmidegvldgasfdadtfnadtwkd 211 Faecalibacterium p...
Feature 1                               ##                       #                            
2V25_A    145 dvKFSEFpDYPSIKAALDAKRVDAFSVDksILLGYVDdKSEILpdsfePQSYGIVTKKDDpAFAKYVDDFVKEHk--NEI 222 Campylobacter jejuni
NP_721864 175 kfNYVQLgSFPELAISLYSKRIDAFSVDksILTGYVSkQSKLLksgfnTQEYGIATKKSNtGLTKYVNYLLKKWtadKSL 254 Streptococcus muta...
AEC02612  179 tlKFSEYaSYPELKVALDSGRIDSFSVDraILMGYVEdSSEILpdkysPQEYGAAMKKGNlALLSVVNSTIADLdasGEL 258 Spirochaeta coccoi...
ACV55104  170 hmSFAEYsTYPEIKIALVTGRVDAFSVDrsILNGYVDdSTMLLdaqfaPQEYGVATKKSNtELADQVDAAIGAMaddGTL 249 Eggerthella sp. HGA1
EEG73883  188 gaGVVKTaKYSDLDTALETGAVDAVCMDkcIAGTYMNeNREFLdvvvaEQQYGVATRKDS-DLSGPVADAVQKMlddGTV 266 Clostridium hylemo...
ADB47166  203 gvSFKQYaDYPAISTALTSGEVSAFCVDksILAIYHTdDRTFIkeefaPQDYGLATKKGS-GMSKYCEEAVQGWlkdGTI 281 Acidaminococcus fe...
CBK98524  212 gvSFRQYdDYPAISTALSAGEVQGFCVDksILAIYKTeGRSYIdaefsPQEYGVATKKGS-DFSTLCDDLVKGWladGTI 290 Faecalibacterium p...
Feature 1             
2V25_A    223 DALAKKWG 230 Campylobacter jejuni
NP_721864 255 ESIYNKHN 262 Streptococcus mutans UA159
AEC02612  259 LAMKAKWG 266 Spirochaeta coccoides DSM 17374
ACV55104  250 TALQERWG 257 Eggerthella sp. HGA1
EEG73883  267 ERLIDKWD 274 Clostridium hylemonae DSM 15053
ADB47166  282 KKLMAKYK 289 Acidaminococcus fermentans DSM 20731
CBK98524  291 EQLIKDNG 298 Faecalibacterium prausnitzii L2-6

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