1LBC,2F34,2V3U


Conserved Protein Domain Family
PBP2_iGluR_non_NMDA_like

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cd13685: PBP2_iGluR_non_NMDA_like 
Click on image for an interactive view with Cn3D
The ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily.
This subfamily represents the ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors including AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) receptors (GluR1-4), kainate receptors (GluR5-7 and KA1/2), and orphan receptors delta 1/2. iGluRs form tetrameric ligand-gated ion channels, which are concentrated at postsynaptic sites in excitatory synapses where they fulfill a variety of different functions. While this ligand-binding domain of iGluRs is structurally homologous to the periplasmic binding fold type II superfamily, the N-terminal leucine/isoleucine/valine#binding protein (LIVBP)-like domain belongs to the periplasmic-binding fold type I.
Statistics
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PSSM-Id: 270403
Aligned: 67 rows
Threshold Bit Score: 196.638
Created: 19-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingdimer interface
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1LBC: Rattus norvegicus Glur2 binds glutamate, contacts at 4A
  • Structure:2F34: Rattus norvegicus Glur5 binds a GluR5-selective antagonist, contact at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   #                    
1LBC_A         3 NKTVVVTTIlESPYVMMkknhe-mlegnERYEGYCVDLAAEIAKHCGFKYKLTIVGdgkYGARDad--tKIWNGMVGELV 79   Norway rat
AAP41208     396 DRPLRITVLmIPPFVQNktekkrydaghPHFEGFCIDILLEMAKILGFQYNVSIVPdgkFGSKKpl--pRGWTGMVRQLI 473  California sea...
XP_002111317 425 GKTIVVTTIiEPPFTMIednp----atgRNYKGYIIDMMDKLASSLNFNYTVRLVAdgqYGAQTmvdgaPQWSGMVGEVE 500  Trichoplax adh...
XP_001603675   6 KPTYRVITIpKPPFVIYdp-------dsNWYGGFLVDLLNEIARRLNFRYEIEMQNeseYGFMDd---qGNWNGLMRDLK 75   jewel wasp
NP_508441    157 LNIFRVVTLiQPPFVQRtgd------pdTPYEGYCIDLINMIQVEVNFTYTIYEVEdgsFGTMDd---nGNWNGLIGALV 227  nematode
EFN76791       6 RPRYRVVTAvSSPFVMYns-------ssGSFYGYCIDLLESMSRISGFDYDLVESTdqlFGHVTe---sGEWTGMIADLL 75   Harpegnathos s...
CAP23262     407 LNIFRVVTLiQPPFVQRtgd------pnTPYEGYCIDLINMIQVEVNFTYTIYEVEdgsFGTMDd---nGNWNGLIGALV 477  Caenorhabditis...
EFX86214     415 ISVFKIAVVvQAPFIMKrka-----ngtVTFYGYCVDLIKDIQAIMGFEYELYEVPdgkYGNMDs---kMNWNGMIKELM 486  common water flea
XP_001638696 379 DRTIRVVSFkGSPFTMPvgnv---sssvDRFEGAVIDLLDRLSEILHFNYTIYMSPdgrVGVENpv--tGNWDGVINELI 453  starlet sea an...
XP_001638659 483 NKTIDVVAVlAPPFVMKktgsg--sngtQEYEGLSIDMLEEMKQSLGFSYKLYLAPdgqFGSRSrt--sNKWNGIMGEII 558  starlet sea an...
Feature 1                 ###    #                                                               
1LBC_A        80 YGKADIAIAPLTITLVREEVIDFSKPFMSLG-ISIMIKKGT--------------------------------------- 119  Norway rat
AAP41208     474 DNKADVALAPFQMSTERAEVVDFTKPFMTKG-TTVVVRRPEqkigifqflsplsnvvwgaifvafvgvslmlfavsrvns 552  California sea...
XP_002111317 501 RRVADIAAAPLSISPVRQQVVDFSMPYIDQG-LTVLTLKTSgqtpslfqaflpltgevwlcillsitlvaiavtfinrfs 579  Trichoplax adh...
XP_001603675  76 EGKADIGLAAVSVMSERMKVVDFTEPIYKPTgISVLMQKPIpktdfyrfltvleldvwlciigayiftslllwifdtwsp 155  jewel wasp
NP_508441    228 SGSADIALAPLSVMAERENDVDFTVPYYDLVgTTILMKKADveyslfkfmkvlewpvwlcivaaylftsillwifdrfsp 307  nematode
EFN76791      76 NDSADFAVAALWITHLRRQVVDYTIPFYKDNgFTIMMRRREqfnvflwfltildlqvwlhfaitflvtsilirlferfsp 155  Harpegnathos s...
CAP23262     478 SGSADIALAPLSVMAERENDVDFTVPYYDLVgTTILMKKADveyslfkfmkvlewpvwlcivaaylftsvllwifdrfsp 557  Caenorhabditis...
EFX86214     487 EKRADIGLGALAVMAERENVIDFTVPYYDLVgISILMAKPQvstslfkfltvlendvwgcilaayfftsillwifdrwsp 566  common water flea
XP_001638696 454 QERADLAVGPITITSHRWKVIDFTQPFMTSG-IGVVMGTENspkpyfrflepfksdlwitifgavlgmgvvnwlfsvvsp 532  starlet sea an...
XP_001638659 559 DDKAKLSIAPLTISSEGQTVVDFTHPYMTFG-VAFVMRVKDveeny---------------------------------- 603  starlet sea an...
Feature 1                                                                                        
1LBC_A           --------------------------------------------------------------------------------      Norway rat
AAP41208     553 drqtrytsnlsesfw----------------------------------yiwgtllrgsltgsphaissrivssawwffc 598  California sea...
XP_002111317 580 pfdhygkackqiqplynsnqtgvsdkdyetwmieneedieafslynslwytlesfllqgadrtprsfsarlitavwwlas 659  Trichoplax adh...
XP_001603675 156 ysyrnckakykddtekrifg-----------------------ckeslwfcltsltpqgggeapknlsgrlvaatwwlfg 212  jewel wasp
NP_508441    308 ysftnnkeryqndiekrqfs-----------------------lkeclwfcmtsltpqgggeapknisgrlvaatwwlfg 364  nematode
EFN76791     156 ysysnmaesytdepdqrfas-----------------------lrecfwfsltaltpegasampkslsgkmavavwwllv 212  Harpegnathos s...
CAP23262     558 ysftnnqeryqndiekrqfs-----------------------lkeclwfcmtsltpqgggeapknisgrlvaatwwlfg 614  Caenorhabditis...
EFX86214     567 ysyqnnkekyaddpeeekref---------------------slkeslwfcmtsltpqgggespkhlsgrliaatwwlfg 625  common water flea
XP_001638696 533 fgfygrcvqsinkrvkksylkqky---------------slsflnsiwssaayylgqgpdgnhpvsasgraavavwwfvi 597  starlet sea an...
XP_001638659     --------------------------------------------------------------------------------      starlet sea an...
Feature 1                                                #  ###                                  
1LBC_A       120 ----------------------PIESAEDLskqteIAYGTLDSGSTKEFFRrskiavfdkm------------------- 158  Norway rat
AAP41208     599 liissiytanlaafltitisdvGINTAGDLaaqkiFDYGTVEGSQTELFFKhtgmqlysrm------------------- 659  California sea...
XP_002111317 660 viitstytanlaafltvnrlqpTITSLAELsktsaINYGVLGNSSAETFFQqstispy---------------------- 717  Trichoplax adh...
XP_001603675 213 fiiiasytanlaafltiskfekTIETFDDLisqykYSYTCIQNSSTNRYFQrmndieyvcyekwkdmtlndslspyeraq 292  jewel wasp
NP_508441    365 fiiiasytanlaafltvsrleqPISSLDDLakqykIEYAPIKGSASETYFRrmaeieetfynmwkemslnesmsprdrak 444  nematode
EFN76791     213 fvivaaynanlaayrtldrlerHIETIDNLrrqyqVDYSTIVDSATYRYFEslkdneellsslwrqmsldesvsdwersq 292  Harpegnathos s...
CAP23262     615 fiiiasytanlaafltvsrleqPISSLDDLakqykIEYAPIKGSASETYFRrmaeieetfynmwkemslnesmsprdrak 694  Caenorhabditis...
EFX86214     626 fiiiasytanlaafltvsrldsPVNSLDDLstqykVQYAPQNGTDVATYFErmayiekrfyeiwkdmslndsmneversk 705  common water flea
XP_001638696 598 tilgatytanmaafltttrmqtPIRRIEDLssqteIAYGCVENSLTQNFFQsssvqryqm-------------------- 657  starlet sea an...
XP_001638659 604 -----------------frfltPYHSNLWLsi-cvMLFAMGIVLWIFSLLSpygyygryaqh------------------ 647  starlet sea an...
Feature 1                                                          #                             
1LBC_A       159 ------------wtymrsaepSVFVRTTAEGVARVRKSkg----kYAYLLESTMNEYIEQRk-pCDTMKVGg-------- 213  Norway rat
AAP41208     660 ------------wahmsvlspKSMSRTVDIGFERVKKGk------YAFIWDSPTIRHTISNd--CDLMEIGs-------- 711  California sea...
XP_002111317 718 ---------------idmkhkLKNVQSTTDGINRVVNSfqg--ekYAFIGDASLLNYAKSQn--CNLTTIGs-------- 770  Trichoplax adh...
XP_001603675 293 lavweyplsdkfikiysaishHGMVASLQDGLDKFNSTds----rFALITEASDVQYQAMId--CSVKEIGp-------- 358  jewel wasp
NP_508441    445 lavwdypvsdkftnmwrymqeSKLPVNMDTAVDRVLNSvd----gFAFIGDATEIKYAALTn--CNLQQVGt-------- 510  nematode
EFN76791     293 ltvweypvddkytkiynamrkTGLLANKEEAVNSVRRInrt--reFAYIGEATQIRYLALTn--CDLKQVGe-------- 360  Harpegnathos s...
CAP23262     695 lavwdypvsdkftnmwrymqeSKLPPDMDAAVDRVLNSvd----gFAFIGDATEIKYAALTn--CKLQQVGt-------- 760  Caenorhabditis...
EFX86214     706 lavwdypvsdkytkiwqsmqdAGLPHTFDEALTRVRASnaenndgFAFLGDATDIRYQVLVn--CDLQMVGe-------- 775  common water flea
XP_001638696 658 -------------mweymklrRSLQPDTYTAIERTLKGk------YAFIHDAPILEYLARKt-yCGRIKLIggyd----- 712  starlet sea an...
XP_001638659 648 -----------prkhkfmeqrKTWMPDIQTAIDRVMNSn------FAFISDRPILEYIARQpeyCGKLKVIggqreslfa 710  starlet sea an...
Feature 1                             #                                    
1LBC_A       214 ---------------nLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWY 256  Norway rat
AAP41208     712 ---------------pFDLKGYGFAYRKNAPYGEKLSMAILKLNDEGILYRLERKWWR 754  California sea hare
XP_002111317 771 ----------------FKKDSYALILSKESLFLKEINIEIFKLREEGFFEATRVKWFE 812  Trichoplax adhaerens
XP_001603675 359 ---------------eFSKKPYAIVLQKNSPLTKQFNRIIYNMKNDNWLEALTDKWWK 401  jewel wasp
NP_508441    511 ---------------eFSRKPYAIAVQSGHILKDKISSAILMLLNERRLETLKEKWWT 553  nematode
EFN76791     361 ---------------eFGMRPFAFAVKKGSPLKSKLDDSITQVALRGIPLELEKKWWD 403  Harpegnathos saltator
CAP23262     761 ---------------eFSRKPYAIAVQSGHILKDKISSAILMLLNQRRLETLKEKWWT 803  Caenorhabditis briggsae AF16
EFX86214     776 ---------------eFSRKPYAVAVQEGSPLRDLLNDAILRLLNQRRLETLKERWWT 818  common water flea
XP_001638696 713 -------------trtFGNAHYGFALPKKSPYTNLLSVEILKLVQSGIAKTMIEEWMI 757  starlet sea anemone
XP_001638659 711 ckrkrkrgkchnfltfGSTYGYGFALPLNSPITNLFNMEIFRLQRDLIIDRLKHKWTY 768  starlet sea anemone

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