Conserved Protein Domain Family
PBP2_TRAP_DctP1

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cd13667: PBP2_TRAP_DctP1 
Periplasmic substrate-binding component of an uncharacterized TRAP-type C4-dicarboxylate transport system DctP1; contains the type 2 periplasmic-binding protein fold
This group includes an uncharacterized DctP1 subfamily of the TRAP Transporters. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270385
Aligned: 11 rows
Threshold Bit Score: 417.132
Created: 2-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                      #                
ABV92443     25 TLTAVHAfpt-tliYTQSFLEFVDKVNAagegvvQIEVRGGPeaig-mfqQPDAVRDGIVDMVYtpgsFYGGTVPEKDam 102 Dinoroseobacter ...
EBA02757     39 KLRYIAFinr-ntvWGKPYDFLSAEVDRlsggdlEIEYVGGSdvig-gfdAPEAIANGVFDISHsansYFAGAMPSSIsl 116 Rhodobacterales ...
EHA13786     24 EITAVHAfpp-sliYTQSFLEFVDKVNErgegvvQINVRGGPevig-lseQPDAVRNGVVDMAYtaasFYAGTVPERDam 101 Halomonas sp. HAL1
EEA96625     33 ILKAVSAfpk-plaFTQSFLGYVDLVNErgkgvvQIQHIGGPevfp-snqQVAAVERGIVDIHYgpagYHLGSMPEADaw 110 Pseudovibrio sp....
YP_166706    34 RVSAVHAfpeflvyTKTFLAMVADINERgkg-ivQIDVRGGPeaig-mfeQPAAVRDGVVDMVHtpgsFYGANVPEIDam 111 Silicibacter pom...
ZP_01747616  31 TLRGVSCfpigappGVPFEEMVSEINEKgkg-vvQINLLGGApaigspfqVVERMAQGAYDIAGcpeaFFGNIIPEAPal 109 Sagittula stella...
EDZ48547     28 TLKAVTAfat-gttFSRDFEAFVDWVNEngegvvQIDLLGGPeavp-pfeLGNAVQAGIVDIANnttaYYPNLLPAGDal 105 Rhodobacterales ...
ABE46615     31 TLRLVSAfpe-ngiYVQRLLPWIAKVNAegkgvlQINFLGGPkaip-tfeAGNAVKTGVVDMAMntgaFYTNVMPEADfl 108 Polaromonas sp. ...
AAN10110     29 VLRAVSAfpektsqSIHFEKFIERVNSTgks-vlRINYVGGPraip-sfeVGNAVMNGVVDIANchggYYASLFPEADal 106 Alcaligenes sp. ...
YP_933788    27 TLRAVTAfgqdtffSQRFKAFVDKVNAEgkg-imKIQVVGGPesmp-pfeVGNALRAGVVDFANstgvFHANLVPEALam 104 Azoarcus sp. BH72
ZP_01015547  27 TLRVVTAfpqntpqNIPLNGFVDRVNETcte-svQLQFVGGPeavp-tfeLGEAVRRGVVDVGYssqsFYASIVPEAAai 104 Rhodobacterales ...
Feature 1                                                #                       # #            
ABV92443    103 vASNLTAVEARENGGtDLMNQIHQEKMGVYYLGw-fDSGVSYNLWTKDepqfeengdLSVEGIKLRGNaVYNAFFTEYLG 181 Dinoroseobacter ...
EBA02757    117 aSGNASLDELKASGAiDAYSDLLMQQRGVMLLGt-pLSGVGYVFQTRGdcs----dlSYYEGKKVRSI-PLYDPILESLG 190 Rhodobacterales ...
EHA13786    102 vASNTNAIYARENGGiDLLNEIHQEKMGTYYLGw-fDSGVSYNFYTIEepsvdadgnLSVSGLRLRSN-PVYDAFFQDYL 179 Halomonas sp. HAL1
EEA96625    111 lGSTITAAEGRKNGGfALMEKAFKDRLGVKLMAh-iDSGIKFHIYTIGepqkradgsVDLTGKRLRTS-PVYKSFFEALD 188 Pseudovibrio sp....
YP_166706   112 vASRVTPMEARANGGaALMDKAHQERFNVRHLGw-vDGGIKFHIYMNSepkfrddgiLDLTGVKLRDN-PIYHAFFEQLN 189 Silicibacter pom...
ZP_01747616 110 rLQEVTFAELRENGG-IDYFQEIADKKNVKFVGrhhDDGAFNLFLAEGkai----dkADLTGLNLRVS-PVYTAFFKALG 183 Sagittula stella...
EDZ48547    106 hLAQNTIQDQRANGCyELIDQVHQEQMGVKYLAr-vGDHMNYHLYLTKpl-----egPDLTGLTIRTT-PVYRAMFEKLG 178 Rhodobacterales ...
ABE46615    109 kLTQIPVAEQRKNGAfDAINKVWNEKGNTQYLAr-mVENQPFHIYTNKki-----dkPDLSGQKIRIS-PVYRDFFQALN 181 Polaromonas sp. ...
AAN10110    107 kLMQVTPQELRRSGGfDAINRIWNTKGNMQYLAm-iYAYSPFHLFLNKkis----kpSELAGMKIRIS-PLYRDFLTALG 180 Alcaligenes sp. ...
YP_933788   105 tLAEKPMAELRANGGyALLDQIHREKGNMVWLAr-vSDGLQYHIYSNKkv-----ssSDFSGFKLRSV-PVYRAFFQSIG 177 Azoarcus sp. BH72
ZP_01015547 105 kLSTNTVAEQRENGGhELLNQIHQERMNAVYLAr-tHEDVPFYLYLTEea-----dpLDLTGKSLRIA-PVYRAFFDTLG 177 Rhodobacterales ...
Feature 1               #                #                          #                           
ABV92443    182 -AQVIDLPTtdVYAALERGVVDATGWTQIGLIDLkwNEFLNYRIEPNFFSTDLGVIVNLEKWeslSDEAKTILQDVAIQH 260 Dinoroseobacter ...
EBA02757    191 -AIPVTTSPaeAYTAMERGVVDGLGWPDIGLLDFkfYEQAKFVMMPDFYQLRTASLINPNAFnslPEELQGVLLEASASA 269 Rhodobacterales ...
EHA13786    180 gAQPISLPTtdVYAALERSVVNATGWTQIGLKDLnwDRFLNYRVDPAFFSTDMGVIVNLDKWkqlSEESQQILQEVAIEH 259 Halomonas sp. HAL1
EEA96625    189 -AIPVSAPVpdIYTGLERNVFDGAGWPIVAIQDLswDKFLKYRVDPGFLQTDLSIVMSPAKWdslSPEAQKILQDAAIEY 267 Pseudovibrio sp....
YP_166706   190 -ATTASMPAteVYSALEKGVVDAAAWTEIGIPQLkwNEFLKYRVDPTFYNTDIGVIFNLDAWnalSPESQKLIQDVVIEW 268 Silicibacter pom...
ZP_01747616 184 -ATVQRSSMpeVYTLMESGAVDGYGWSVRGISPSw-IPVTKYRVEPGVYRASIHTVANLNKWnslSDEARAILNDVVIGM 261 Sagittula stella...
EDZ48547    179 -ATLVRTAPgeVYTALERGAIDGYGWPSQGVLDLgwHEQTAYRVDPGFYQVDVNFLVNLDSWnslSDEQRALLEKGAAWI 257 Rhodobacterales ...
ABE46615    182 -ANVVTTPPgeVYTALERGVVDGYGWPIGGIFDLnwQEKTKFRVDPGFYDAEVSLTMNLPAYkklTDAQRNYLQKQLLVL 260 Polaromonas sp. ...
AAN10110    181 -VQVVNVAPgeIYTALERGVVEGYGWPIYSIFDLgwHEKTKYRVEPGFYNAETSIIMNLDTYkrlTPAQRAVLDAALAYA 259 Alcaligenes sp. ...
YP_933788   178 -ASPLQVPPgeVFTALERGVVDGYGWPSIGVFDLgwQEKTKYRVEPGFYNVEVSFFMNQNTWkklDPAQRAFLEKQIAWV 256 Azoarcus sp. BH72
ZP_01015547 178 -AQLVQTPPseMYTAVERGVVQGLGWTSLGIFDFglQEHLKYRVEPGFYLSDGNVLVNLDKWndlSEAAQSCLNEAAVWI 256 Rhodobacterales ...
Feature 1                                                                                
ABV92443    261 ERdsve---alraKRDADFAALEEGgMQVVSLeGEAKERYLAAAREKTWERMRglm---aehPSGDGNYDTLI 327 Dinoroseobacter shibae ...
EBA02757    270 DKigaa---wakeKRNAEHAEMEKAgVEFVSLpDDQATKFIGLTEEKLWDNITan------aPEDAARLRPLF 333 Rhodobacterales bacteri...
EHA13786    260 EResae---klaeLAEEQQAQLEADgMQVVTLeGEAAQRFSDAARDATWERMRrqm---erhPSGLEHYDMLI 326 Halomonas sp. HAL1
EEA96625    268 EQksyd---qfqtIIAATDTKVQEDgMTIVRLeGKAADDYLDKAYDAVWNRMKas------nSPLYDELKKAY 331 Pseudovibrio sp. JE062
YP_166706   269 EGksya---drqaEVAADAKTLADGgMSFVSHsAEAGETYRKMADDSAWARMYeridgggagAETYMALRKAY 338 Silicibacter pomeroyi D...
ZP_01747616 262 ETrmegtsdyakqLDEETFKKLAESgIETITLeGEEAEKWVGMARQTAWDEFIeq------nPETGPKLKELF 328 Sagittula stellata E-37
EDZ48547    258 EEqnag----niaRNEAEAKAQAEAgIKTITLdGENGKLWSETAQAEGWGEVMkt------dPQLGEKLQACL 320 Rhodobacterales bacteri...
ABE46615    261 EAentf----wtrYGNVETARQETAgIQTIKFdAATSKAFREKAYEVGWAGAMkq------sPEVAARFKTLF 323 Polaromonas sp. JS666
AAN10110    260 EGlned----ykaINAREEKKQADAgIQVIRFeGAEGREFIRRAYDKVGRASLl-------aHRRMVRFCVAT 321 Alcaligenes sp. AL3007
YP_933788   257 EAqnag----dlkKAEEEKARQAKAgIEAVALpADQVNLFVARAYEAGWKGVEqa------sPQNAAKLKPLF 319 Azoarcus sp. BH72
ZP_01015547 257 EGqgqe----msdLSVQDLARQAEAgIEAIELtGEDREEFLRRASDAGWAEIEel------aPENAAKLKELL 319 Rhodobacterales bacteri...

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