Conserved Protein Domain Family
PBP2_PotD_PotF_like_3

?
cd13664: PBP2_PotD_PotF_like_3 
TThe periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold.
This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270382
Aligned: 10 rows
Threshold Bit Score: 445.65
Created: 21-Feb-2012
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the polyamine transporter family.
  • Citation:PMID 9651355

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                         
ADI15574      21 ELRLYNWtgytsQELLQKFEAEtgiRVSLDTYDSNetLLAKLKsga-tgyDIVVPshnFVQIFVSEGllepihasemany 99  Truepera radiov...
CAM76240       7 QLRILTWanylsPQVVARFQQEtgiSVTVDTVTSYtaMIAPLLagn-qvyDVVFPadfQVTELVAQGllervgvdrlanf 85  Magnetospirillu...
EAQ25877       3 LYNWGNYt---nPELLTKFEAEtgiKVNVTDYDSNdtALARIRqgg-hgfDIVVPsnsYMQTWISEGlivpldksvvtnh 78  Roseovarius sp....
NP_107363     42 NLNIYNWgeytsPELIDKFSKTyniHVTQTDFDSNdtALAKVRqgs-sgfDVVVPsqsFIPTYIQEGllaetnpgqmena 120 Mesorhizobium l...
NP_248894     25 QLNVVSWsgyfsPQLLEKFEKEsgiRVTVDSYDSNetLLAKLKqgg-agyDVAIPsqqFVPILVKEAllerfdpaaepyy 103 Pseudomonas aer...
CCB88707      39 TLNVYGWpemflPEVIDEFEKEtgiKVRLHYYTTNeeMLVTMKategqgyDLILPsdyAVSMLIKEGlikpldhsqlnfl 118 Simkania negeve...
NP_249014     26 TLHFANWsdyypPELLKKFEKDtgiKATLDAYDSNetLLAKLKagg-gayDVVVPsdsFIEIFVKEGllqkldksqlpsl 104 Pseudomonas aer...
EEX16615      28 ELQLYNWtdytsPELIEKFEEEtgiSVTLDTYDSGetLLAKLQsga-agyDIAIPthnFVPILISEGliqpinaseldgy 106 Citricella sp. ...
YP_001057184  20 ELHLANWpdwmpPELLKKFEKEtgiKTTLDIYDSDatLLSKLQagg-ggyDVVVAgdyYVQVFAKNGlvrkldksrlrnm 98  Burkholderia ps...
CBJ81265     215 SLVLYNWqsytsPEMLQKFKKEhniSITLLEYKSNeeALESIQlgk-inaDLAVVadnFLLHWINAGllqpinvqsmtnf 293 Xenorhabdus bov...
Feature 1                                                                                        
ADI15574     100 sniderwrnpdwdpgNVYTVPWqWGTTSFAVDtalydgdidtye--vlfnppevfrgRIGMFDSWdeVLPMALRYTGsei 177 Truepera radiov...
CAM76240      86 wnvddvwrarafdprNEYTIPHvWGTTAFAVDtavyggnmdslr--lvfqpppslagRMAVVDSGfdMVQLALVWLKlpr 163 Magnetospirillu...
EAQ25877      79 gniapewvdvdfdpgREYSVPWqWGTTGVIVNtsvydgdindag--lifsppdalkgKINVIPEMsdVMAIAIYYAGges 156 Roseovarius sp....
NP_107363    121 knleerwrnpafdpgRKYSVPWlWYTSGVSVNtsvfkgdintwk--vildppaelkgKINIVPEMndIMFAAIKFEGgtw 198 Mesorhizobium l...
NP_248894    104 anlldnlkkpawdpeGAYSVPFiWGTTSVVLDgaryagpadsya--vlyqppeelrgRINMFDSVseVVDMASLYLGipl 181 Pseudomonas aer...
CCB88707     119 dtlnpillkhdydpeNRYAIPYqWEVFGFGIDsdyfqdknldps-wntifdpedpelKLAMVNDPieAVNFAAYYLNgaa 197 Simkania negeve...
NP_249014    105 gnlkenfrtlgfdpgHDYSIPYlWGTTGYSYDtakvpggrleeswkpffeppaelkgKVVALNSIeeLFIPATYYLGide 184 Pseudomonas aer...
EEX16615     107 drivpnlaspwwdegNVYSIPWhWGTTSFTVDtavysgnvddyd--vifnppeelagQVAMFKSPdeVITMAQVALGlpf 184 Citricella sp. ...
YP_001057184  99 animpeyrhplfdpnRDYTVPYlIFMTGFAYDgarvpggklddswkslfdppaalrgEIADLDSVeeLYMAASWYLKqde 178 Burkholderia ps...
CBJ81265     294 knitprwrsspadpqRTYGIPWsWGVVGTVVHtdvhdgdintwk--vvlepptslfgTINVGSDMndLIYAAIRYHGgki 371 Xenorhabdus bov...
Feature 1                                                      #  #                        # #   
ADI15574     178 cttdpEAFRRALEVLEAQEPYVKVYts--egILENMIAgetaMNTYWnGATMRVRaer--ptVRYAYPVEgvSGWMDNLA 253 Truepera radiov...
CAM76240     164 cstqaDNIDKVRDLLLPILRRVAVVgs--drIVQDMIDgryaLAVMWnGDALMARkrr--psLRYANPVEgsLVWSDVIA 239 Magnetospirillu...
EAQ25877     157 cttdmEVMRKVRDTLVEAKTHWKALdy---gTVDAHVAgdfsAGIYWnGATMRARlqn--adLAYGYPKTgyPIWMDSAT 231 Roseovarius sp....
NP_107363    199 ctsdkALLTKVRDRLLEAKKSWLSIdy---sGTLKMASgdvsASLDWsGSALKRRtqn--hsIAYGLPKEgfTYGSDNVV 273 Mesorhizobium l...
NP_248894    182 csadpKQMQRVLELLKAQKPFVKTYsskagsIRENLAAgevdMSMFWgGSSMRARelk--psLKYLYPKEgvLAWVDNLV 259 Pseudomonas aer...
CCB88707     198 phldeKKTRKVRDLLEKQKSWVEAYa----gLRADYLLatknCHVALcTSSYIFRsstqyphVKFTAPKEwtFISIENMS 273 Simkania negeve...
NP_249014    185 ctedaREAQKVLDLLLRQKPALAMYns--dgTIERMAAgevaMHQQWnGAFHRAHaqr--asLEYVYPKEgiRLFIDNFA 260 Pseudomonas aer...
EEX16615     185 csedpKEMQQVLDLLMGQKPDVKTYns--dgILERLVSgdvsVHQNWnGYSLLARkek--psLQYAFPEEgvVAWADSLV 260 Citricella sp. ...
YP_001057184 179 ctenpEDAKRVLAVLRKQKPYVKTYsn--egTIDRMISrqvvVQHGWsGATVRVQrkl--psAAFALPREgvRMAQDNFL 254 Burkholderia ps...
CBJ81265     372 cdsnpKLLEKVKKTLLEAKKHWAAMey---gSVNMMASgkfkAGIDWnGAALRQRrin--shIQFGFPREgvLIFSDNLV 446 Xenorhabdus bov...
Feature 1                                        #                                               
ADI15574     254 LARgapNKEAALTFINWFLePENAALQSNFarYANAVSGAeafmdeplrt--apeivppegANIIFSPTCpeeyIRLADR 331 Truepera radiov...
CAM76240     240 VAKgapNRAGGQAFLSFMMrPEIAAQQSNFngYANMIRGAeafmdpglln--apeiitppsSALDFFTHCgngaETQQEA 317 Magnetospirillu...
EAQ25877     232 VLAdaqNPENAMKFINFILePENAAMISNFarYANGVTGSeefmddvmreapeivvapelaAAGKFSPACpqdvNDLQSQ 311 Roseovarius sp....
NP_107363    274 VLKdapNLENAKLFQNFIMaPENAALNSTFakYGAAIIGAekyysddmkgapeltipddmkSKGELLTLCdpkiTQLYSR 353 Mesorhizobium l...
NP_248894    260 IPRgsrNPDNARRFIAFLAqPENAALTQNFlkHQSPVKGVepyldaslkd--apelhvpagTRVVFSQTCgedaIRLADR 337 Pseudomonas aer...
CCB88707     274 IPKastKDAQVYEFLNFIYkAENLGRDTNTffRFPATTNTtpflevpsefliflenshlfeGKLYFIRHLi--pEKEIRK 351 Simkania negeve...
NP_249014    261 IPRdasNVKEAHVFIDWMMrPENIAAASNFakYNNAIVGSekfmekalfddpaintpqdklDRLKPFKLCspkaLALRSK 340 Pseudomonas aer...
EEX16615     261 VPKgapNYDNAITFIEFMLePENIAIQSNSsgYANGITGSeafmdkglkd--aaelsppegTPLKFIESCspkaVELQNR 338 Citricella sp. ...
YP_001057184 255 IPAkakNVNEAHTFLNWMMkPENMAAASNAylYPNEISGAerymsadllknpavmlpaaykERLRPFKLCspaaLALRDK 334 Burkholderia ps...
CBJ81265     447 ILKrskNYENARLFLNFIMqPENAALNSAFhgYDSTIEGAdkflpswmknalelkipehvlKNSDHSIMCppfvQKKYLN 526 Xenorhabdus bov...
Feature 1          
ADI15574     332 VW 333 Truepera radiovictrix DSM 17093
CAM76240     318 IW 319 Magnetospirillum gryphiswaldense MSR-1
EAQ25877     312 IW 313 Roseovarius sp. 217
NP_107363    354 IW 355 Mesorhizobium loti MAFF303099
NP_248894    338 LW 339 Pseudomonas aeruginosa PAO1
CCB88707     352 IW 353 Simkania negevensis Z
NP_249014    341 VW 342 Pseudomonas aeruginosa PAO1
EEX16615     339 VW 340 Citricella sp. SE45
YP_001057184 335 VW 336 Burkholderia pseudomallei 668
CBJ81265     527 IW 528 Xenorhabdus bovienii SS-2004

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap