Conserved Protein Domain Family
PBP2_PotD_PotF_like_1

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cd13661: PBP2_PotD_PotF_like_1 
The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold.
This group represents the periplasmic binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from plants and plant-symbiotic cyanobacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270379
Aligned: 11 rows
Threshold Bit Score: 337.082
Created: 20-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the polyamine transporter family.
  • Citation:PMID 8621624

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                         
CAH67864     144 PLRVVALrgs-fpPAWIKDFVEAqgkrLKFSPEFRTNLdvLYSEMSQCLDkgqlkq-------------ksamaaDVVSI 209 Indian rice
CAL58562      72 PLKVRALrgs-taQNASREFAQTqtrrVKLELSTTPSIarSYEELLRPGKrigk------------------kgiDCATL 132 Ostreococcus tauri
EFJ07275      22 PLRIVGLrgs-vpPVWIKDFMVSqgkqMKLGAEFLGSLdtIYTQLVSAKNsgqlts-------------kstmaaDVVTL 87  Selaginella moe...
XP_001760514  24 PLRIVGLrgs-vpPAWLKEFLMSqgknAKLSAEFKGSLsdILAELAVSMEnsqitp-------------ksamaaDLVTV 89  Physcomitrella ...
AAG51275     118 PLKLVALrgs-vpPSWIKEFMSSqgkrVRLKTQFRGNLeeIFFDLSKPSKngkkga-------------astaaaDMISI 183 thale cress
NP_484343     35 QLNVQLLkgs-ipGQVVNKFRQSlkqqAQLKFAPVEQLeeLYKRLVNWQHnpkahdeqewtrfipfrqsqtfpvaDLVTL 113 Nostoc sp. PCC ...
YP_001733579  30 TLQINTLrgs-isPQLLTLFRQNqgqtVSLDLKPLEQLqeLFVVLQDAAMripetsenf--------lnrsaavpDLLTL 100 Synechococcus s...
NP_441853     36 EVQFLNRsl---pPQLINQFQRQfpqaKELNFKAIANLqsLFDNLQTWHNaqnadtskglwg--sgsranqtpkaQLVTG 110 Synechocystis s...
YP_401283     27 DLQLLLPgnt-vpAPILRRFQDRt--qITVQLDRAAGLvdSSRLLLTEDPsr---------------------lpNLLGI 82  Synechococcus e...
YP_477982     30 HLPLVVAlkqgipASLLNEFRRRtqarFRLQLLDERDQ--LLAYLQQSVQpadaawwdpg-----gwfrrrlpvaALSLL 102 Synechococcus s...
EFJ52374      90 TLAIVALrgs-ipAQWTLDFQTAigkyCGFSLDQRMQLadIFKELSDTSGenkrs----------------aglaDVITL 152 Volvox carteri ...
Feature 1                                                                                        
CAH67864     210 GDsWLGYAIRKGlvepvknaeeqdwfqslsn--rwkihlcrnrngevdpngSIWAVPYRWGTVVIAYKknkfkrhnlkpi 287 Indian rice
CAL58562     133 GDeWLRPAIERGlilpipnaersawwnaipp-vwrqlvrrdprsgllsssgDIFGAPYRFGCVTIAYRkdklpkgvkppt 211 Ostreococcus tauri
EFJ07275      88 GDsWLGVAIRNKliasvgkpqelewfqhldp--kwqailrrdaqgrpdetgQVWGAPYRCGCMVIAYRkdklakaglqdi 165 Selaginella moe...
XP_001760514  90 GDsWLATAVQGGlldpirnaeqfdwfnrlhp--kwqnfirrdpegiinpqgLVWGVPYRWGSLVFAFKkdklerngispi 167 Physcomitrella ...
AAG51275     184 GDsWLSFAIKEKliepmkgiedqdwykglsdkwksqiylrrnyagekapdgETWAVPYRWGTMVIAYKkskfqnyklapi 263 thale cress
NP_484343    114 GDyWLTTAIERKliqaieteqlkqwsglds---rwrelvtrneqgvpdpqgKVWAAPYRWGSTVIVYDrekfkklgwipq 190 Nostoc sp. PCC ...
YP_001733579 101 GHgWYQQAIALGfvqplsleeltrweelge---pwqrflrrnvqgeidpqgQLWGQPYRWGTTMLVYRkdklknlgwtpt 177 Synechococcus s...
NP_441853    111 GDlWLERVIKEKliqpfvpdqlsqwsslpp---rwqllgqrndqglpdqsgKIWAVPYRWGPTMIIYRqqpfadlgwqpt 187 Synechocystis s...
YP_401283     83 GDaWLQSAIASGrlapfnpnhwrhwtslpq---rwrqqlrrdrqgvpseagEIWAAPYRWGTTMIAFRrdrltsplqdw- 158 Synechococcus e...
YP_477982    103 GAdALDRAIAAGwlaplpasllgerwq----------nldprwqaaalregQIWGVPWRWGVTAIAYRrdrvrepirdw- 171 Synechococcus s...
EFJ52374     153 GDiWMGAAIQRGllqpipgatssrw-------------yrmlpqrlrqlghRNAAGMPDPTGEVYAYRrdrllrrggrpi 219 Volvox carteri ...
Feature 1                                                                                        
CAH67864     288 qdwgdlwrpelagKISMVDSPreVIGAVLKHLGssyntnd------------------------meseitGGRETVLESL 343 Indian rice
CAL58562     212 -dwsdlfdprlqgMIGMPNAPrlVLSAALKAEGmsvnv----------------------------gdvgGVDGRVSARV 262 Ostreococcus tauri
EFJ07275     166 kdwddlwkpelagRISMIESTreVVGLVLKSLGasynarn------------------------ldaevhGGQEAVKERF 221 Selaginella moe...
XP_001760514 168 rdwkdlfqpqlagRIAMVDSPreVVGAVLKSLGasyntnd------------------------fdadvpGGREAVKERF 223 Physcomitrella ...
AAG51275     264 edwadlwrpelagRIAMVNSPreVVGAVLKYMRasynttd------------------------ldsqvpGGRLAVEKNL 319 thale cress
NP_484343    191 -dwsdlwrselrsRISVLDQPreIIGLVLKKLGksyn-----------------------------tenlATVPDLEKEL 240 Nostoc sp. PCC ...
YP_001733579 178 -dwadlwrpelqgKISLLNQSreVLGLLLKKQGksyn-----------------------------etdpEAIANLESDF 227 Synechococcus s...
NP_441853    188 -dwsdlwrpelkqRIALVDDPreAIGLTLKKLGysyn-----------------------------vtnpKAVNALPSAL 237 Synechocystis s...
YP_401283    159 ---tdlwrpelrgQLILPDDPreVIGLTLKRLGwsyn-----------------------------qanlAEIPQLEPLL 206 Synechococcus e...
YP_477982    172 ---adlwrpelagKLTLPDHPreVIGLTLKKMGrsyn-----------------------------dplnPEDVELRQEL 219 Synechococcus s...
EFJ52374     220 ldwcdllqpalagRVAMLDSPreLLAAAVRSLAaenaglgdgggrgvdggksgrawvsvnasarelaaagISEEVLQGRV 299 Volvox carteri ...
Feature 1                                     #  #                       # #                     
CAH67864     344 TQLQNQVQLFdstnYLKSFGVgdvwVAVGWsSDVIPAAkrm-sdVAVVVPKSGsSLWADLWAIPSatkfqtdr---iggr 419 Indian rice
CAL58562     263 RQLRESVKVFddlqYLQALACgdcaVVVGPsEDVFSVArrs-tlIVPVVPRSGtTLWSDCWVVPTtsvtn---------v 332 Ostreococcus tauri
EFJ07275     222 LRLRKQAMFDni-nYLRALGAgdvwIAVGWsNDVLPFAkrq-snVGVIAPASGtSLWADVWAIPAaikiksdk---aggr 296 Selaginella moe...
XP_001760514 224 LALQKQVRLFddndYLKAMSAgdvwVAVGWsSDIIPYSkra-snISVYAPESGtSLWADLWAIPAtttfekae--nvggr 300 Physcomitrella ...
AAG51275     320 ASLMKQIRLFdsnnYLKAFNVgdvwVTVGWsSDVIPVAkrm-snVTVIVPKSGaTLWADLWAIPAvsdsgkeae-qrggr 397 thale cress
NP_484343    241 QTFNQQVKIYssntYLEPLILgdtwLAVGWsSDLIPVLary-pqLSVVIPRSGtSIWADLWVSPKet------------- 306 Nostoc sp. PCC ...
YP_001733579 228 QTLHRQVKFYssthYLQPLNMgdtwIAQGWsQDILPLLqry-rnLGAVIPASGtALWCDLWVQPQrs------------- 293 Synechococcus s...
NP_441853    238 QELATQVKFYnskyYLQALLNkdvwLAVGWsNQIIPLLrnq-seLRAVIPSSGtSLWADLWTMPAem------------- 303 Synechocystis s...
YP_401283    207 AALQQQVKLYssrnYLQPLLLgdalAAVGWsADILAALrrd-srLAAVVPRSGtAIWLDLWVQPQgr------------- 272 Synechococcus e...
YP_477982    220 GSLHRQVLTYtssdYLPILRLadswVAVGWsQDLYATQany-peLAVVIPASGsAIWWDVWVRPHvedhahednahtest 298 Synechococcus s...
EFJ52374     300 AAFRRQVRLFssqdHVRALQAgdvwAVVGYsQELVQLAersgssIELLAPLSGtQLWADVWAVPAgargg--------hr 371 Volvox carteri ...
Feature 1                                      #                                                 
CAH67864     420 trgPSPLINQWFDFCLqSARSLPFRQDvipGASPLFLEkpvpevpqernkrk---------------------------- 471 Indian rice
CAL58562     333 gggPSPALEQWINYTLsPARVNMRVGLk-gGISPLMFDgrgiesgyarypnvarp------------------------- 386 Ostreococcus tauri
EFJ07275     297 irgPSPLVSQWLEFCLqPARSLAFHQEafcGASPLRFAdvadngssepagp----------------------------- 347 Selaginella moe...
XP_001760514 301 vrgPSPLVFQWLDFCLqPARATTFANDvfvGASPLTWSekseteisentfletgasqs---------------------- 358 Physcomitrella ...
AAG51275     398 vrgPSPLINQWIEFCLqPARSLPFTREvipGASPSALDgplvtepektkkdr---------------------------- 449 thale cress
NP_484343    307 --aKDGLSSQWIDFCLqPNIARQIALLt-kTNSPVATNigtadiqes--------------------------------- 350 Nostoc sp. PCC ...
YP_001733579 294 -qtSFETLKTWLDFCWePAAIQQISRSs-hGASPLIYAatnldpait--------------------------------- 338 Synechococcus s...
NP_441853    304 --eAAEITYEWLNFSAqPSSLEQMATFsnaLAVPYQNLevsalst----------------------------------- 346 Synechocystis s...
YP_401283    273 --vSEVFSDRWIDFGWaPTIATQFSQLg-pAASPAILTaaavapvd---------------------------------- 315 Synechococcus e...
YP_477982    299 qtdSGSLLADWLDFVLnPEFAPRLVNLs-gIPSVLPLDlaqlaprl---------------------------------- 343 Synechococcus s...
EFJ52374     372 hsgPSPLLPVWIEFTLsPGRITGQPSLkggAPAALLPAtpeptdpaatrllaaihehrrhllearaaaesqgplaaarrv 451 Volvox carteri ...
Feature 1                                                                                        
CAH67864     472 ---------------------------------------------------------pkletnlvrgappLEILEKCEFL 494 Indian rice
CAL58562     387 ------------------------------------------------------vlgtsdedmlkgwipdDSVWAASEFQ 412 Ostreococcus tauri
EFJ07275     348 ----------------------------------------------------------rldtnlvsglppKDILGKSEFL 369 Selaginella moe...
XP_001760514 359 --------------------------------------------------gkkpktvvtldsnivqgmppDEIVAKSEFL 388 Physcomitrella ...
AAG51275     450 ---------------------------------------------------------tkldtnlvtgvppPEILSKCEFL 472 thale cress
NP_484343    351 --------------------------------------------------------------lgglflnsQEVFAKGEFL 368 Nostoc sp. PCC ...
YP_001733579 339 --------------------------------------------------------------dnpliyldQNTFRASEII 356 Synechococcus s...
NP_441853    347 ---------------------------------------------------------------npllafsPELLERCEFL 363 Synechocystis s...
YP_401283    316 --------------------------------------------------------------anplqippTAVLDKSELI 333 Synechococcus e...
YP_477982    344 ---------------------------------------------------------------qrradlqISTWQRSEIW 360 Synechococcus s...
EFJ52374     452 sllkpflsdpwvshasgaglngagsggkrhdvageeshgaamgtvaaatptrgsvfpsvelhhangylpaAPLLARSEFL 531 Volvox carteri ...
Feature 1                          
CAH67864     495 EPLse-kaLDDYQWLITR 511 Indian rice
CAL58562     413 LPLtd-rvRAQYVAMSRR 429 Ostreococcus tauri
EFJ07275     370 EPLee-etLAKYRWLLEA 386 Selaginella moellendorffii
XP_001760514 389 EPLsd-kaLSDYQWLLSA 405 Physcomitrella patens subsp. patens
AAG51275     473 EPLpe-atLSEYRLLIET 489 thale cress
NP_484343    369 LPLsp-eaTKQYEALFAK 385 Nostoc sp. PCC 7120
YP_001733579 357 EMLdp-daTAQYQQVWQA 373 Synechococcus sp. PCC 7002
NP_441853    364 APLdi-atVNQYKQLWQT 380 Synechocystis sp. PCC 6803
YP_401283    334 LPLpe-avRDRYLALWQT 350 Synechococcus elongatus PCC 7942
YP_477982    361 RPLss-aeAESYLNLWDQ 377 Synechococcus sp. JA-2-3B'a(2-13)
EFJ52374     532 LPLpdeatAEMYRRVLGD 549 Volvox carteri f. nagariensis

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