1POY,1POT


Conserved Protein Domain Family
PBP2_PotD

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cd13660: PBP2_PotD 
Click on image for an interactive view with Cn3D
The periplasmic substrate-binding component of an active spermidine-preferential transport system; contains the type 2 periplasmic binding fold.
This group represents the periplasmic binding domain that serves as the primary polyamine receptor of ABC-type spermindine-preferential transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270378
Aligned: 4 rows
Threshold Bit Score: 517.521
Created: 15-Mar-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1POY; Escherichia coli spermidine/putrescine-binding protein binds spermidine, contacts at 4A.
  • Citation:PMID 8621624

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                                                         
1POY_1      3 TLYFYNWTeYVPPGLLEQFTKEtGIKVIYSTYESNetMYAKLKtykdgayDLVVPstyYVDKMRKEGmiqkidkskltnf 82  Escherichia coli
EFR47996   21 NLNIYSWSeYFSQEILEEFEKEtGIKVHLDTYTNNqeMYANVRliyehnyDLIMPstyFILPLREKGliqkidktkipnf 100 Helicobacter canad...
ADW17689   31 VVNLYIWSeYIPDEVIAAFTKEtGIKVNLSTYDSNeaMYAKVKlvg-kgyDLVVPssdYVGLMRREGlllpvdtkkianf 109 Desulfobulbus prop...
1POT_A      5 TLYFYNWTeYVPPGLLEQFTKEtGIKVIYSTYESNetMYAKLKtykdgayDLVVPstyYVDKMRKEGmiqkidkskltnf 84  Escherichia coli
Feature 1                                                                                     
1POY_1     83 snldpdmlnkpfDPNNDYSIPYiWGATAIGVNgdavdpksvtswadlwkpeykgSLLLTDDAreVFQMALRKLGysgntt 162 Escherichia coli
EFR47996  101 knisqnflgqfyDVYNQYSIPFlFRIMGLAYNektlngihihswrdlwrdefkgKVAIIKDYqkMLQVSLVSLGysrntk 180 Helicobacter canad...
ADW17689  110 slidprftnqsfDPGNGYSVPYmWGSTSLAVNtqviggdtvrkmadlwkpelkgKLLLPNDPreVMGIGLKVLGysinek 189 Desulfobulbus prop...
1POT_A     85 snldpdmlnkpfDPNNDYSIPYiWGATAIGVNgdavdpksvtswadlwkpeykgSLLLTDDAreVFQMALRKLGysgntt 164 Escherichia coli
Feature 1                                                  #  #                      # #      
1POY_1    163 dpKEIEAAYNELKKLMPNVAAFns----dnPANPYMEgevnLGMIWnGSAFVARqagtpIDVVWPKEGgIFWMDSLAIPA 238 Escherichia coli
EFR47996  181 eeEKITKAFEELLILAKNANFIdfskinneDLISFFDgnnaIATMWiNDVKAIQkynknIHFIIPKEGgMIWMDSFALTA 260 Helicobacter canad...
ADW17689  190 dpEHLRQAFERLQSLMPQVRVFds----dsPKQALLSgevaAGLVWnGEAYVANnenkaIHYLYPPEGfSLWVDSFCIPK 265 Desulfobulbus prop...
1POT_A    165 dpKEIEAAYNELKKLMPNVAAFns----dnPANPYMEgevnLGMIWnGSAFVARqagtpIDVVWPKEGgIFWMDSLAIPA 240 Escherichia coli
Feature 1                                  #                                                  
1POY_1    239 nakNKEGALKLINFLLrPDVAKQVAETIgYPTPNLAARKllspevandk--tlypdaetikNGEWQNDVGaaSSIYEEYY 316 Escherichia coli
EFR47996  261 nakNIENAYKFINFTLrPDISVKIANNI-KFNTTLKYDLikqnlnldnyqnivfmsddelnHFEFEVDIGqnLLIYIKYW 339 Helicobacter canad...
ADW17689  266 gaaHVEAAHRFIDYVLrPQVSAIISQSMgYSSPNAKVFDflpaemknnp--ivnpsvedaaRGEFLDSLDeqTLKIYEGY 343 Desulfobulbus prop...
1POT_A    241 nakNKEGALKLINFLLrPDVAKQVAETIgYPTPNLAARKllspevandk--tlypdaetikNGEWQNDVGaaSSIYEEYY 318 Escherichia coli
Feature 1      
1POY_1    317 Q 317 Escherichia coli
EFR47996  340 D 340 Helicobacter canadensis MIT 98-5491
ADW17689  344 W 344 Desulfobulbus propionicus DSM 2032
1POT_A    319 Q 319 Escherichia coli

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