1ELJ


Conserved Protein Domain Family
PBP2_Maltodextrin

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cd13657: PBP2_Maltodextrin 
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The periplasmic binding component of ABC transport system specific for maltodextrin.
This group includes the periplasmic maltodextrin-binding protein of a binding protein-dependent ATP-binding cassette transporter. Maltodextrin is a polysaccharide that is used as a food addtive and can be enzymatically produced from any starch . Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270375
Aligned: 12 rows
Threshold Bit Score: 400.6
Created: 20-Aug-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1ELJ; Pyrococcus furiosus maltodextrin-binding protein in complex with alpha-D-glucose, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #      #                                                             #  ##
1ELJ_A         7 KVVIWHAmq--pnELEVFQSLAEEYMAlx------peVEIVFEqk---pNLEDALKAAIPTGq------GPDLFIWaHDW 69  Pyrococcus furi...
YP_002246441 164 TITVWHGwglgtaEADALDKIIAEFQKaypnv-ivnqVPVDFN------NLQNKFLTAAPQGq------GPDIVIGpHDW 230 Coprothermobact...
YP_920458     45 KITIWTAwt--ggEYDALKAVIDDFRAknpny-qidiVNVPFD------QLKNKVIQAVPVGe------GPDLFTGpHDW 109 Thermofilum pen...
YP_633528     25 PLKLWHAyr--ggEEMALVQATELFTSktgv--qvelLALPYD------AYAAKLTNAIPHGv------GPDVFIFnHER 88  Myxococcus xant...
YP_002136599  23 EVVVWHAyr--gaEKAAFEKVAAAYNArpgnpnkvttLAVPYD------AFADKISAAVPRGk------GPDVFIFaQDR 88  Anaeromyxobacte...
YP_002565304  63 TTTLWADls--aaEDEAMSGYIDEYESds-------gDTINKEap--ggELDQQLETAIPAGd------GPESWIWaHDW 125 Halorubrum lacu...
AEH38732      44 STQLWHTla--egEADLLETYIAQFEEet-------dHDIAAEev---sELNEQLNTSLPVGe------GPDIFTHaHDW 105 Halopiger xanad...
NP_560746     64 TIRIWHAln--peEESVFKQIAAMYTQth------pnVQIVFEnk--apDLQTAVLAAISTGe------KFDLFIWaHDW 127 Pyrobaculum aer...
YP_002937079  47 EVKIWHDg-----DENIMQTIADCANEkla----ednIKVTFEkks-glTDQLQLYGNDESN-------GPDMYLYaHDS 109 Eubacterium rec...
ADZ82046      53 ELTLWHEte--egIASVLQEQLDQLAPdi-------kVNVVRKen---mTEALKLSAADPSN-------APDFIWYaHDK 113 Clostridium len...
ADV64442      97 KIYFGHAlt--enERKAFQDIISMFKNeypg---ievVEVAYSgmdvlkSQISAIATLSPEQrsnyigkVPDLFTWaHDW 171 Desulfurococcus...
YP_001636738  62 TIRIWHQwd--gaYLTAIEQAFRDYEAan------pnVKIDLSkp---eDVSNALNVAIPAGe------GPDIIGWaNDQ 124 Chloroflexus au...
Feature 1                                                           #                            
1ELJ_A        70 IGKFAEAGLLEPideyvtedllne-----fapmaqdamqyKGHYYALPFAAETVAIIYNKEMVs--ePPKTFdemkaime 142 Pyrococcus furi...
YP_002246441 231 LGQFAKAGLIDPisiselvlran------ylttavngvsyAGKVYGLPESVKSDALFYNKDFVk--tLPTSIndllnahq 302 Coprothermobact...
YP_920458    110 TGELVQAGALVDitdkvsafkge------ymesalqgvtlKGKIYGLPESIKLPALIVNKKLLa--tPPKTLdelwsimd 181 Thermofilum pen...
YP_633528     89 LLNFHAMHLVAPasglaredyf---------pnavealevDGQVYGYPMSLKSLALYVNTKLVp--qPPETTdallamlp 157 Myxococcus xant...
YP_002136599  89 LGGWIEAGNTVEsidffmddalka----rfipstleamtyRGGVWGLPLNYKCIALVYNKKLVk--aPPRTSaelealak 162 Anaeromyxobacte...
YP_002565304 126 VGRFAVREEPPFlydasddvdvsld---sytetarqaaqfDGALHGLPFASETVALFYNEDMVd--ePPETMeemvsimd 200 Halorubrum lacu...
AEH38732     106 VGPFEDRGWLYDvsddltididet-----ytdtaleaatwQDGVYGLPYAAETVGLLYNRDLVd--sPPETLdemvevme 178 Halopiger xanad...
NP_560746    128 IGLMVEAGVLKPvdnevadvls---------rfsapipqyKGHIYGLPFAAETVALICNKQMVs--qPPKTFadllaimr 196 Pyrobaculum aer...
YP_002937079 110 LGTFAEMGILAPitdvisedvmad-----llpmtveagnyKDTQYLMPVYYETLLFMYNKAKWeg-dVPETTdelydymv 183 Eubacterium rec...
ADZ82046     114 IGMFAEMNIIDSidnyldpsvydk-----flpmtaqaglyNGKHYQIPAYYETLMFMYNKALLd--kAPTTTdellelak 186 Clostridium len...
ADV64442     172 IGSFADKGYILPleevlssdtiindiapnllpialsavtyNLKTYGLPYAGETIALIVNKNLVp--nPPASFdemlqvmk 249 Desulfurococcus...
YP_001636738 125 IGQQALVGNIVAlndygitedflrs---tyepaavngviwQGKIWALPETQEGIALIYNKAVVgdmqLPTSLdellqmak 201 Chloroflexus au...
Feature 1                                ##                                                      
1ELJ_A       143 k-----yydpanekyGIAWPin-aYFISAIAQAFG-GYYFDDKt--eQPGLDKPETIEGFKFFFTEi-wPYMAPTGdy-n 211 Pyrococcus furi...
YP_002246441 303 -------kypvpggsPLVFNagdfYHESWLHFGMG-GGVFNGTnykdVSPIKNAGAVKAFQALVDMknkSVMPSSLpdyg 374 Coprothermobact...
YP_920458    182 -------qfkakgmyGLAYDvqnaYFSSCWFYGLG-AYYLDPNt--lETALDSPGAVQAFQIIAKFs--KYLPPDIsy-d 248 Thermofilum pen...
YP_633528    158 a-----lsdadagrfGLAYEsgdfYFHAGFLFGFG-GELFDANg---RASFDTQGMARSLAFVKDLqdqRFIPQEAsg-a 227 Myxococcus xant...
YP_002136599 163 k-----ltargagrfGLAYSysdyYYHAALQNAFG-GRVFDAG----KPVLDAPENVKAAQLLQAWikaGFMPTEPst-a 231 Anaeromyxobacte...
YP_002565304 201 d-----hhdpangqyGLSYPvtdpYFVSGFIQAYG-GDIFDEEn--lKVTVDSDACKQGIDALETLs--DYVPSDPgy-e 269 Halorubrum lacu...
AEH38732     179 d-----hhdpddgqyGVAYPladpYFASAWIHAFG-GYLYDDEa--dELGHELDETIEGVELLVDSf-wPYAAADPsy-e 248 Halopiger xanad...
NP_560746    197 q------fnkppqtyGIAYVvn-pYFISAWIHGAG-GYYFDDEt--eKQGLTDPKSIAGFTFFKSYi-mPYVGPNPtdyn 265 Pyrobaculum aer...
YP_002937079 184 a-----htdvnagtyALVNQhstaYNVAPVINGFG-GYIIDKDa---NPGLNTQETKDAIAYNKKF---AALEADGdy-n 250 Eubacterium rec...
ADZ82046     187 -------skttgdsyGFVEQhstaYYFSAWAHAFG-ASIINDKa---QPGLNTAEMEEAIDYHKQFv--QYMPTDGew-n 252 Clostridium len...
ADV64442     250 s-----ftnrntgsyGLSYQad-pYHLYPFVTAFG-GYYYDEAt--kSIGVNSTGTKQGIKFYIQNv-lPYVDVSDlglt 319 Desulfurococcus...
YP_001636738 202 dfraanpdktfvcnqGFGGNd--aYHVAPIYFGYGvPSYVDDEg---NVYVNTPEMIKGGEWLAEMs--KVSFSEQsy-d 273 Chloroflexus au...
Feature 1                          #                                       #                     
1ELJ_A       212 TQQSIFLEGrapMMVNGPWsindvk----kaginFGVVPLPpiikdgkeywprPYGGVKLIYFAAg-----iKNKDAAWK 282 Pyrococcus furi...
YP_002246441 375 TSMSLFTNNkaaFFITGPWeyanlk---kalgdkMGVMVIPgg---------kPFVTIESTMLSKy-----aKNKPAALE 437 Coprothermobact...
YP_920458    249 MMTNLFMNGkaaMAINGPWwigdlkkafgenladIEITLIPaidpa---hparPFMTVEAVFVTKnaa--erGVLDEAIA 323 Thermofilum pen...
YP_633528    228 LVKSLFNDGraaMIISGPWfagei-----apqvdYRVVGLPavstt--nipirPFLGVETAYVSAr-----sERAEQAQA 295 Myxococcus xant...
YP_002136599 232 LITSLFNEGkaaMVFSGNWflgei-----apgidWAVTTLPslteag-gkpmrPWTTVEGVYVAAp-----sKNKDAAFD 300 Anaeromyxobacte...
YP_002565304 270 SQIVAFADGlapFAINGPWelgnlq----deidnLGVTTLPtvdg----nnprTYSGIQLFYFSSmladadqSTVDATTG 341 Halorubrum lacu...
AEH38732     249 SQIAVFNDGnapFVIVGPWevsgfr----dsgidVGIARLPtvdg----gdpsPYTGVQLWYFTQele--dgEALATSRE 318 Halopiger xanad...
NP_560746    266 TQVNLFLSGqapCMVNGPWsigavk----qrgidVFVAPLPpvnat---yipkPYGGMKMFYVTI-------YASKEAID 331 Pyrobaculum aer...
YP_002937079 251 TVTALFNEGqaaAIIGGPWlvsgik----aagidLGIKSLAdfklpn-gnglaPYSGVQSIGVLKya---aeNKKEAIAK 322 Eubacterium rec...
ADZ82046     253 TVTTLFLEGkaaSIVNGPWfvasak----dagidLGVAPLPtvssn--gnalkPYSGVQGIMISTt-----cKDKEAGKK 321 Clostridium len...
ADV64442     320 YQTNLFLNGktpMMITGPWniatink--slglsnIAIAPLPnigd----kvpkPFSGYRGIYITLmanvggrERLYASVL 393 Desulfurococcus...
YP_001636738 274 ICKAALAEGkaaMWWTGPWaiagie----qdgvdYGILPMGk-----------PFVGIKTLMLTRnav--erGNAEVALD 336 Chloroflexus au...
Feature 1                                                                    #         #         
1ELJ_A       283 FAKWlttse------esiktLALELGYIPVLTKVLDDpei--kndPVIYGFGQAvqhaylMPKSPKMSAVWGGVDGAINe 354 Pyrococcus furi...
YP_002246441 438 FMKFftgatlgqsnfdaaayLGKQIGHVPAAVNAYSDtsi--andPIIKVFSAQaakgvpIPNAPEMASVWSAMNQILPt 515 Coprothermobact...
YP_920458    324 LAHYitge--------asvkLAKMAGHVPTWKNAMKDpav--sgdKVISAFFKQaeygvpMPNVPEVAQMWNVVPKYISq 393 Thermofilum pen...
YP_633528    296 LARFislge-------asrvRAMVGRQIPADVAAYTLkev--redTLISSFREAarhatpMPNTLEMARVWEPMKLALRa 366 Myxococcus xant...
YP_002136599 301 FVKFatdvd-------aariMALEGRQSPANAKVYADakv--asdPVLAAFKKQvdvavpMPNLPEMTMVWSPATTAMGa 371 Anaeromyxobacte...
YP_002565304 342 LAEWyttne------divlsNADEQGYIPVLTNVVDNdd----lsSEVQAFAQQvdhgvpIPTHPDMDSVWTPVTDALEr 411 Halorubrum lacu...
AEH38732     319 FAEWytttd------nvilsNADELGYIPVHADLSESde----lsDEVAAFAENvsigevMPTSPKMERVWEPTRDALEr 388 Halopiger xanad...
NP_560746    332 FMKWfttdp------qvakiLMDQLGYVPVIKDVQIQd-------PVVQGFYEAvkniylMPVSPKMQPVWGTVDLIIQn 398 Pyrobaculum aer...
YP_002937079 323 VLETiaspe-------vgiaLANKSNCAPANSKAYDDadv--aanEMIMAMKATaetaqpMPNIPQMSVMWGPAEAFLAa 393 Eubacterium rec...
ADZ82046     322 VLEFlcqkd-------lseaIALKNGAAPAHQDAYNNaei--qgsDIIMTLKACaenavpMPNIPQMDVMWSCTENALAa 392 Clostridium len...
ADV64442     394 FTLYvalnd------nalkiLVDKNNYVPVKNTMITYiqenkdkyPIVYGFLTQlmrsvpMPKDPMMDKVWNVGTYINAi 467 Desulfurococcus...
YP_001636738 337 IMKYftsae-------vqakLALTNKTVPAATAALQNpev--aalPTLAGFGAAlntgvpMANTPFASAQWGPVGEASVa 407 Chloroflexus au...
Feature 1                             
1ELJ_A       355 ilqdpqnadIEGILKKYQQEI 375 Pyrococcus furiosus
YP_002246441 516 vyq--gklsPQEAANQAYQQI 534 Coprothermobacter proteolyticus DSM 5265
YP_920458    394 vyq--gqlsPQDAAKAAAQEL 412 Thermofilum pendens Hrk 5
YP_633528    367 vlq--ggtaPQDAGALADRRY 385 Myxococcus xanthus DK 1622
YP_002136599 372 itr---ggdAKAALAKAQAKV 389 Anaeromyxobacter sp. K
YP_002565304 412 vfn--deqdSDAALDQAASEI 430 Halorubrum lacusprofundi ATCC 49239
AEH38732     389 iln--geeeARPAFEQAAEEI 407 Halopiger xanaduensis SH-6
NP_560746    399 sivs-dqktISLAVNDAVKDL 418 Pyrobaculum aerophilum str. IM2
YP_002937079 394 vnk--sgedIDTAAETYQQEA 412 Eubacterium rectale ATCC 33656
ADZ82046     393 iyk--sggsTKPIMDAAQQEA 411 Clostridium lentocellum DSM 5427
ADV64442     468 lgk---yseALQSGKTVDQAV 485 Desulfurococcus mucosus DSM 2162
YP_001636738 408 iwt--gaqtPAEALAAAQQAI 426 Chloroflexus aurantiacus J-10-fl

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