2O1M,2YLN,2IEE,4GVO


Conserved Protein Domain Family
PBP2_Cystine_like

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cd13626: PBP2_Cystine_like 
Click on image for an interactive view with Cn3D
Substrate binding domain of cystine ABC transporters; the type 2 periplasmic binding protein fold
Cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette (ABC) transporters. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Also, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270344
Aligned: 15 rows
Threshold Bit Score: 238.757
Created: 1-Jul-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:2YLN; Neisseria Gonorrhoeae L-cystine ABC transporter binds L-cystine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #                                         #                ###      #  
2O1M_A        17 TITVGTGtqFPNICFIde---kGDLTGYDVELIKELDKrlphyKFTFKTxeFSNLLVSLGQhkVDIVAHQXek-skEREK 92  Bacillus subtilis
P54952        34 VLHVGATgqSYPFAYKe----nGKLTGFDVEVMEAVAKki-dmKLDWKLleFSGLMGELQTgkLDTISNQVav-tdERKE 107 Bacillus subtilis
2YLN_A        58 TVTVGTEgtYAPFTYHdk---dGKLTGYDVEVTRAVAEkl-gvKVEFKEtqWDSMMAGLKAgrFDVVANQVgltspERQA 133 Neisseria gonor...
2IEE_A        22 KIVVATSgtLYPTSYHdtdsgsDKLTGYEVEVVREAAKrl-glKVEFKExgIDGXLTAVNSgqVDAAANDIdv-tkDREE 99  Bacillus subtilis
AET70036      45 KITFAMSgqYPPFNYFne---eNELTGFDVEIGQEIAKri-nvNPEPIAteWDGIIAGLTTskFDMILGSMai-tdERLQ 119 Desulfosporosin...
4GVO_A        10 TITVGTGtqFPNVCFLde---nGKLTGYDVELVKEIDKrlpgyKFKFKTmdFSNLLVSLGAgkVDIVAHQMek-skEREK 85  Listeria monocy...
EGO64614      48 TLKIGTEgtYPPFTFKne---kGELQGFDVEIIIEVAKrl-gvKAEFVPteWKAMFAGLDSerFDVIANQIsi-neKRLE 122 Acetonema longu...
YP_001525400  63 GLKTGVDgtFAPHAMPnl---sGGVQGFNIDLANELAKrl-gtKVTIDAtqFSGLVPGLQAgtYDFIAAPVtv-nkDRAE 137 Azorhizobium ca...
YP_355249     34 QLSAATEgtYPPFSMRap---dGELDGLEIRVMGEVAKrl-nlEYVPVLvkWESVLIGLEAdqYDVISVAMdi-teERQQ 108 Rhodobacter sph...
YP_454992     41 KLSVATEgtDPPFSMRsa---dGKLDGLEIRVMKEVAKrl-qlEYVPVItkWDSVLVGLQAnqFDMSSAAMdi-tpAWQK 115 Sodalis glossin...
Feature 1                                               #   ##                                   
2O1M_A        93 KFLFNKvAYNHFpLKITVLqnndt-irgieDLKGKRVITSatsNGALVLKkwnedngrpFEIAYEgqg-anETANQLKSg 170 Bacillus subtilis
P54952       108 TYNFTK-PYAYAgTQIVVKkdntd-iksvdDLKGKTVAAVlgsNHAKNLEskdp--dkkINIKTYet--qeGTLKDVAYg 181 Bacillus subtilis
2YLN_A       134 TFDKSE-PYSWSgAVLVAHndsni--ksiaDIKGVKTAQSltsNYGEKAKaa------gAQLVPVdg--laQSLTLIEQk 202 Neisseria gonor...
2IEE_A       100 KFAFST-PYKYSyGTAIVRkddlsgiktlkDLKGKKAAGAattVYXEVARky------gAKEVIYdnatneQYLKDVANg 172 Bacillus subtilis
AET70036     120 KVNFSN-PYYRSgAQIIVPsdsti--sgadDLKGKTVGVVlgtTFETKARel------gANVNTYkg--dpDAFHDMLNg 188 Desulfosporosin...
4GVO_A        86 KFLFNDvAYNNFpLQLTVLdsnns-instkDLAGKRVITSatsNGALVLKkineeqgnnFEIAYEgqg-snDTANQLKTg 163 Listeria monocy...
EGO64614     123 KYDLST-PYTVSgAQVIVNkettn-issveDLKGRKVGVTqssNWEEIAQka------gANIRHYkg--anEIFADLQAk 192 Acetonema longu...
YP_001525400 138 QLLFTE-GYLNTdFQFVVKkdape-itkleDLKGKVIAVNkgsAYDSWARdlad--kigWTVESYgt--nsDAIQAVLTg 211 Azorhizobium ca...
YP_355249    109 KVTFAD-GWLESgGRVVVRtdsdi--aapaDLKGRPVGGLvasNWTKIAEel------gGEVKAYka--esDAMQDLANg 177 Rhodobacter sph...
YP_454992    116 AILFSD-GWIESgGRIIIPqdssi--tsaqDLKGKRIGAQvssTYAQLAVdh------cATLKNYid--vtAVVQDLANg 184 Sodalis glossin...
Feature 1              #                                                                       
2O1M_A       171 raDATISTp-FAVDFQnkts-tikEKTVgnvl--snaKVYFXFNKne--qTLSDDIDKALQEIiddGTLKRLSLKWLG 242 Bacillus subtilis
P54952       182 rvDAYVNSr-TVLIAQikkt-glpLKLAgdpi--vyeQVAFPFAKddahdKLRKKVNKALDELrkdGTLKKLSEKYFN 255 Bacillus subtilis
2YLN_A       203 raDATLNDe-LAVLDYlkknpnagVKIVwsapadekvGSGLIVNKgn--dEAVAKFSTAINELkadGTLKKLGEQFFG 277 Neisseria gonorrh...
2IEE_A       173 rtDVILNDy-YLQTLAlaafpdlnITIHpdik-yxpnKQALVXKKsn--aALQKKXNEALKEXskdGSLTKLSKQFFN 246 Bacillus subtilis
AET70036     189 rlDAVITDk-IVGLNAiknn-nypFKLVgdli--yveKMGIAIRKds--pELLDAVNKALTDMmddGTYKAISEKYFN 260 Desulfosporosinus...
4GVO_A       164 raDATISTp-FAVDFQnkts-aikEKVVgdvl--snaKVYFMLGKde--tKLSKKVDEALQSIiddGTLKKLSEKWLG 235 Listeria monocyto...
EGO64614     193 riEATVNDrlFIAEYFlkns-shnLAVAgqtf--deaKMGFAFRKgs--pELIEAVNKAIREIqadGTYVKISHKWFG 265 Acetonema longum ...
YP_001525400 212 raYANVAGn-TVSAWAvkn--npaIKLSylhs--tglVWAIPVRKdn--vALRNKLDAAIECMkkdGTLASMHEKWFG 282 Azorhizobium caul...
YP_355249    178 nvDAIITDa-VAAGYAikns-nlpLKMLdepv--stiQKGFAIKKgk--pHLTAAINKALGEMiadGTYAKLTSELVG 249 Rhodobacter sphae...
YP_454992    185 niDGVINDs-IGNAYLikdm-hlpLRQTpdyv--sriQKGFAFTKnk--pHLAAPVNKALAEMvadGTYAKLVTPIVG 256 Sodalis glossinid...

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