4G4P


Conserved Protein Domain Family
PBP2_GlnP

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cd13619: PBP2_GlnP 
Click on image for an interactive view with Cn3D
Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily.
Periplasmic glutamine binding domain GlnP serves as an initial receptor in the ABC transport of glutamine in eubacteria. GlnP belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270337
Aligned: 18 rows
Threshold Bit Score: 325.425
Created: 1-Jul-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4G4P; periplasmic glutamine-binding protein from Enterococcus faecalis binds glutamine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #                                     #                ####    #       
4G4P_A     24 KYTIGTDLTFAPFEFQDskGKYIGIDVDLLDAIAKDQDFEVDLKPlgFDSAVQAIQSKQIDGMIAGMSITDERkksFDFS 103 Enterococcus faeca...
EDP69131   37 TYIIGTDITFAPFEYKDadGEYKGIDVDLLEAIAKDQGFKYELRPlgFSAALQALETNQVDGMIAGMSITPERqdsFDFS 116 Carnobacterium sp....
BAH35071   39 TYTIATDLTFAPFEFENedGKLVGIDIDLLNAIAEDQGFKVDIKQlgFDAALQAVQAGQADGVIAGMSITDARkqvFDFS 118 Rhodococcus erythr...
EDS71496   35 SYIIATDTTFAPFEFTDdkNNFTGIDVDILSAIAKDQGFDYELQSlgFDAAVAALESGQADGVIAGMSITDERakkYDFS 114 Anaerofustis sterc...
CAI55799   33 TYEIGTDVTYPPFEFANkdNKYVGIDIDIMKAIAKSEGFKVNIQPlgFNAAVQAVQSGQIDGVIAGMTITDERkakFDFA 112 Lactobacillus sake...
EEV28921  271 VYRIASDSAFAPFEFQNedNEYVGIDVDLMNRAAELQGFNIEFNFigFSGALQALDGNQADGMIAGMTITDERrqsYDFS 350 Enterococcus casse...
BAL62473   47 TYVIASDSAYAPFEFQNseGKYEGIDVDLVRRIAELEGFKVEFKFigFSSAVQAVESGQADAVIAGMTITPDRaktFDFS 126 Melissococcus plut...
CCF02630  285 TYKIVMDSSFAPFEYQNdsGEYEGIDVELIKAIAEQQGFNVEISNpgFDAALNAVQAGQADAVMAGMSITDARkeiFDFS 364 Streptococcus mace...
EDT74999   43 KYIIACDSNFPPFSFEEn-GTYTGIDVELLESISKKEDFDYELKPmdFGSIISGLSDGTIDGAMGAISITDERkeiLDFS 121 Clostridium butyri...
NP_267915 261 VYTIASDNSFAPFEFQNddKQFTGIDVDLLNAIAKNQGFKLKWNFigFQAAVDSVQSGHADGMMSGMSITDARkqvFDYG 340 Lactococcus lactis...
Feature 1                                     #  ##                                       #   
4G4P_A    104 DPYFDSGLQLAVKKgndkiKSYDDLKGKTVAAKVGTESANFLEknkeKYDYTIKNFDDAtGLYKALENGEADAIVDDYPV 183 Enterococcus faeca...
EDP69131  117 EPYFESGVVMAVSAdnddiTSYEDLEGKTVAIKVGTTGAAFAEsiqeEYGFNVNTFEDSaNMYEDVQTGNSDAAFEDYPV 196 Carnobacterium sp....
BAH35071  119 DPYFESGVQMAVLEtdndvKSYEDLKGKRVAVKNGTEGASFAEsikdQYGFTTVYFADSaSMYDEVRTGNSVAVFDDYPV 198 Rhodococcus erythr...
EDS71496  115 DAYYDSGVVMAIKAddssiKSYEDLNGKKVACKTGTEGATFAEsikdKYGFEIAYFKDSpKMYEDVKTGNTVACFEDYPV 194 Anaerofustis sterc...
CAI55799  113 DPYYHTGVVMAVKKds-kiTGLKGLKGQRVAIKTGTAAGDYAKskakEYGFTTVTFDDSdNMYNDVVNGNSVACFEDEPV 191 Lactobacillus sake...
EEV28921  351 DSYFESGIQIAVKEgndsiNSYEDLEGKTVGAKVGTESADFLIaneeKYGYSIKYYDAAdQLYAAVNGGQIDAMMDDYPV 430 Enterococcus casse...
BAL62473  127 NAYFDSGIQIAVKKdnktiKSYKDLKNKTVGIKTGTASADFMEknkeKYGYTIKYLDTTdALYSALSINEIQAMMDDYPV 206 Melissococcus plut...
CCF02630  365 DAYYTSNILLAVKSgs-svKSYSDLKGLTVGAKNGTSSYTWLSehadEYGYTLKVFDEAsTMYDSLNSGSIDALMDDEAV 443 Streptococcus mace...
EDT74999  122 EEYFESGLSMGVKHddtsiSKFEDLQGKNVAVKKGTAGSEFAEdnkeKYSLNLKYFDNSqSMFLDVEEGSSDAVIEDHPI 201 Clostridium butyri...
NP_267915 341 SPYYSSNLTIATSStddsiKSWKDLKGKTLGAKNGTASFDYLNahakEYGYTVKTFTDAtTMYSSLNNGSINALMDDEPV 420 Lactococcus lactis...
Feature 1                             #                                     
4G4P_A    184 LGYAVKng--qKLQLVGDKeTGSSYGFAVKKGQnpELIKKFNAGLKNLKDnGTYDKILNNYL 243 Enterococcus faecalis V583
EDP69131  197 MAYAIQsg--lKLKIPTDPePGDNYGFAVNKGQnaELLEMFNNGLINIRAnGTYDDILDTYL 256 Carnobacterium sp. AT7
BAH35071  199 LAYGITqg--nGLKTVTEKeVGASYGFAVNKGQnaELLQMFNAGLQNLRDdGQYDEIVSTYL 258 Rhodococcus erythropolis PR4
EDS71496  195 MGYGISqg--nGLKMVTDMeKGSSYGFAVLKGKnaELLKMFDEGLKNIKAsGEYQKILDKYI 254 Anaerofustis stercorihominis DSM 17244
CAI55799  192 MQYGIKtg--lGLKIVTNPvQGGDYGFAVKKGTnpELVAKFNKGLKKLKAsGEYAKIQAKYL 251 Lactobacillus sakei subsp. sakei 23K
EEV28921  431 IGYAISqg--qKLVTPIEKeSGGQYGFAVKKGQnpELIQMFNEALKEMKRtGEYDQIINKYI 490 Enterococcus casseliflavus EC10
BAL62473  207 IDYGITqg--qPLITPIPReNGGSYGLAVKKGQnqEFLTRFNKGLKELKHtGEYKKIINKYI 266 Melissococcus plutonius DAT561
CCF02630  444 LLYAIQqg--rNFETPIAGeKSGEYGFAVSKGSnpELIEMFNNGLAALVEsGEYDEIVNKYL 503 Streptococcus macedonicus ACA-DC 198
EDT74999  202 IAYEVKkatpaNLKIAGDKlKTFNYGFAVNKGKnqELLDKFNKGLNKVRAdAEYEKIVSQYI 263 Clostridium butyricum E4 str. BoNT E...
NP_267915 421 IKYAIKqg--qKFATPIKPiPDGQYGFAVKKGSnpELIEMFNNGLANLRAnGEYDKIIDKYL 480 Lactococcus lactis subsp. lactis Il1403

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