2B65,1N04,2D3I,1AOV,1JNF,2HAU,1F9B,1FCK,1SQY,1B0L,1CB6,2P1S,1NKX,1BLF,1BIY,1JW1,1CE2,1SDX,1DTZ,1LCF,2BJJ,1N76,1LFH,1B1X,2HAV,1H76,1SUV,1IQ7,1LFI,1LFG,3SKP,3V89,3VE1,3QYT,3V83,4H0W,3S9L,3MC2


Conserved Protein Domain Family
PBP2_transferrin_C

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cd13617: PBP2_transferrin_C 
Click on image for an interactive view with Cn3D
The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
Transferrins are iron-binding blood plasma glycoproteins that regulate the level of free iron in biological fluids. Vertebrate transferrins are made of a single polypeptide chain with a molecular weight of about 80 kDa. The polypeptide is folded into two homologous lobes (the N-lobe and C-lobe), and each lobe is further subdivided into two similar alpha helices and beta sheets domains separated by a deep cleft that forms the binding site for ferric iron. Thus, the transferrin protein contains two homologous metal-binding sites with high affinities for ferric iron. The modern transferrin proteins are thought to be evolved from an ancestral gene coding for a protein of 40 kDa containing a single binding site by means of a gene duplication event. Vertebrate transferrins are found in a variety of bodily fluids, including serum transferrins, ovotransferrins, lactoferrins, and melanotransferrins. Transferrin-like proteins are also found in the circulatory fluid of certain invertebrates. The transferrins have the same structural fold as the type 2 periplasmic-binding proteins, many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor.
Statistics
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PSSM-Id: 270335
Aligned: 40 rows
Threshold Bit Score: 550.081
Created: 3-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2B65; C-lobe of bovine lactoferrin binds ferric iron and carbonate ion, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                          #                          
2B65_A      1 YTRVVWCAvgPEEQKKCQQWSQQsgqNVTCATasttdDCIVLVLKGeaDALNLDgGYIYTAGKcglVPVLAENRKsskhs 80  cattle
1N04_A    342 ENRIQWCAvgKDEKSKCDRWSVVsngDVECTVvdetkDCIIKIMKGeaDAVALDgGLVYTAGVcglVPVMAERYDdesqc 421 chicken
2D3I_A    342 ENRIQWCAvgKDEKSKCDRWSVVsngDVECTVvdetkDCIIKIMKGeaDAVALDgGLVYTAGVcglVPVMAERYDdesqc 421 chicken
1AOV_A    342 ENKIQWCAvgKDEKSKCDRWSVVsngEVECTIlddnkDCIVKITKGeaDAISLDgGFVYTAGVcglVPVVGESYEdetqc 421 mallard
1H76_A    343 CKKVRWCAigHEETQKCDAWSINsggKIECVSaenteDCIAKIVKGeaDAMSLDgGYIYIAGKcglVPVLAENYKtegen 422 pig
1IQ7_A      1 ENRIQWCAvgKDEKSKCDRWSVVsngDVECTVvdetkDCIIKIMKGeaDAVALDgGLVYTAGVcglVPVMAERYDdesqc 80  chicken
Q6PGT3    349 ETKVRWCTqsKAEKNKCDDWTTIsggAIECTEaasaeDCIVQILKGdaDAVTLDgGYMYTAGQcglVPVMGEYYDqddlt 428 African clawed frog
3VE1_B    339 CKPVKWCAlsHHERLKCDEWSVNsvgKIECVSaetteDCIAKIMNGeaDAMSLDgGFVYIAGKcglVPVLAENYDksdnc 418 human
4H0W_A    339 CKPVKWCAlsHHERLKCDEWSVNsvgKIECVSaetteDCIAKIMNGeaDAMSLDgGFVYIAGKcglVPVLAENYNksdnc 418 human
3S9L_C    353 CKPVKWCAlsHHERLKCDEWSVNsvgKIECVSaetteDCIAKIMNGeaDAMSLDgGFVYIAGKcglVPVLAENYDksdnc 432 human
Feature 1                 #                          #   ####                                 
2B65_A     81 sl-dcvlrptEGYLAVAVVKkanegl-twnslkDKKSCHTAvdRTAGWNIPMGLivnqtgSCAFDEFFSQSCAPGadpks 158 cattle
1N04_A    422 s---ktderpASYFAVAVARkdsnvn--wnnlkGKKSCHTAvgRTAGWVIPMGLihnrtgTCNFDEYFSEGCAPGsppns 496 chicken
2D3I_A    422 s---ktderpASYFAVAVARkdsnvn--wnnlkGKKSCHTAvgRTAGWVIPMGLihnrtgTCNFDEYFSEGCAPGsppns 496 chicken
1AOV_A    422 s---kdeeqpAYYFAVAVVKkssait--wnnlqGKKSCHTAvgRTAGWNIPMGLihnktgSCDFDDYFSEGCAPGsppns 496 mallard
1H76_A    423 c----vntpeKGYLAVAVVKkssgpdlnwnnlkGKKSCHTAvdRTAGWNIPMGLlynkinSCKFDQFFGEGCAPGsqrns 498 pig
1IQ7_A     81 s---ktderpASYFAVAVARkdsnvn--wnnlkGKKSCHTAvgRTAGWVIPMGLihnrtgTCNFDEYFSEGCAPGsppns 155 chicken
Q6PGT3    429 pcqrrssgtkGVYYAVAIAKkgtkvs--wsnlrGVKTCHTAvgRTAGWNIPVGLitnetkNCDFASYVGQSCAPGsdvks 506 African clawed frog
3VE1_B    419 -----edtpeAGYFAVAVVKksasdl-twdnlkGKKSCHTAvgRTAGWNIPMGLlynkinHCRFDEFFSEGCAPGskkds 492 human
4H0W_A    419 -----edtpeAGYFAIAVVKksasdl-twdnlkGKKSCHTAvgRTAGWNIPMGLlynkinHCRFDEFFSEGCAPGskkds 492 human
3S9L_C    433 -----edtpeAGFFAVAVVKksasdl-twdnlkGKKSCHTAvgRTAGWNIPMGLlynkinHCRFDEFFSEGCAPGskkds 506 human
Feature 1                                   #                                                 
2B65_A    159 rLCALCAGDdqgldk----cvpnskEKYYGYTGAFRCLAEdvGDVAFVKndtvwentngeSTADWAKNLKredFRLLCLD 234 cattle
1N04_A    497 rLCQLCQGSggippek---cvasshEKYFGYTGALRCLVEk-GDVAFIQhstveentggkNKADWAKNLQmddFELLCTD 572 chicken
2D3I_A    497 rLCQLCQGSggippek---cvasshEKYFGYTGALRCLVEk-GDVAFIQhstveentggkNKADWAKNLQmddFELLCTD 572 chicken
1AOV_A    497 rLCKLCQGSgenllek---cvasshEKYYGYTGALRCLVEq-GDVAFIKhstvgenvsgsNKDDWAKGLTrddFELLCTN 572 mallard
1H76_A    499 sLCALCIGSerapgre---clannhERYYGYTGAFRCLVEk-GDVAFVKdqvvqqntdgkNKDDWAKDLKqmdFELLCQN 574 pig
1IQ7_A    156 rLCQLCQGSggippek---cvasshEKYFGYTGALRCLVEk-GDVAFIQhstveentggkNKADWAKNLQmddFELLCTD 231 chicken
Q6PGT3    507 kLCALCIGDpekrlesskkcspsasEAYYGYSGAFRCLVEk-GQVAFAKhttvfentdgkNPAGWAKDLKsgdFELLCPD 585 African clawed frog
3VE1_B    493 sLCKLCMGSglnlc------epnnkEGYYGYTGAFRCLVEk-GDVAFVKhqtvpqntggkNPDPWAKNLNekdYELLCLD 565 human
4H0W_A    493 sLCKLCMGSglnlc------epnnkEGYYGYTGAFRCLVEk-GDVAFVKhqtvpqntggkNPDPWAKNLNekdYELLCLD 565 human
3S9L_C    507 sLCKLCMGSglnlc------epnnkEGYYGFTGAFRCLVEk-GDVAFVKhqtvpqntggkNPDPWAKNLNekdYELLCLD 579 human
Feature 1                        #                                                            
2B65_A    235 gtrkpvteaqsCHLAVAPNHAVVSRSdraAHVEQVLLHQQALFGkngkncpdkfclfksetKNLLFNDNTECLAKLggrp 314 cattle
1N04_A    573 grranvmdyreCNLAEVPTHAVVVRPekaNKIRDLLERQEKRFGvngseksk-fmmfesqnKDLLFKDLTKCLFKVregt 651 chicken
2D3I_A    573 grranvmdyreCNLAEVPTHAVVVRPekaNKIRDLLERQEKRFGvngseksk-fmmfesqnKDLLFKDLTKCLFKVregt 651 chicken
1AOV_A    573 gkraktmdyktCHLAKVPTHAVVARPekaNKIRELLEGQEKLFGlhgteker-fmmfqsqtKDLLFKALTKCLVKLrqgi 651 mallard
1H76_A    575 garepvdnaenCHLARAPNHAVVARDdkvTCVAEELLKQQAQFGrhvtdcsssfcmfksntKDLLFRDDTQCLARVgk-t 653 pig
1IQ7_A    232 grranvmdyreCNLAEVPTHAVVVRPekaNKIRDLLERQEKRFGvngseksk-fmmfesqnKDLLFKDLTKCLFKVregt 310 chicken
Q6PGT3    586 gsrapvtdyksCNLAEVPAHAVVTLPekrTFVAEIVVNQQSLYGrkgfqkdifqmfestggKDLLFKDSTQCLLEIpkkt 665 African clawed frog
3VE1_B    566 gtrkpveeyanCHLARAPNHAVVTRKdkeACVHKILRQQQHLFGsdvtdcsgnfclfrsetKDLLFRDDTVCLAKLhdrn 645 human
4H0W_A    566 gtrkpveeyanCHLARAPNHAVVTRKdkeACVHKILRQQQHLFGsnvtdcsgnfclfrsetKDLLFRDDTVCLAKLhdrn 645 human
3S9L_C    580 gtrkpveeyanCHLARAPNHAVVTRKdkeACVHKILRQQQHLFGsdvtdcsgnfclfrsetKDLLFRDDTVCLAKLhdrn 659 human
Feature 1                       
2B65_A    315 tYEEYLGTEYVTAIANLK 332 cattle
1N04_A    652 tYKEFLGDKFYTVISSLK 669 chicken
2D3I_A    652 tYKEFLGDKFYTVISSLK 669 chicken
1AOV_A    652 tYKEFLGDEYYASVASLN 669 mallard
1H76_A    654 tYESYLGADYITAVANLR 671 pig
1IQ7_A    311 tYKEFLGDKFYTVISSLK 328 chicken
Q6PGT3    666 tMQEFLGDKYHTAVTSLN 683 African clawed frog
3VE1_B    646 tYEKYLGEEYVKAVGNLR 663 human
4H0W_A    646 tYEKYLGEEYVKAVGNLR 663 human
3S9L_C    660 tYEKYLGEEYVKAVGNLR 677 human

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