Conserved Protein Domain Family
PBP2_ProWY

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cd13615: PBP2_ProWY 
Substrate-binding domain of ABC-type osmoregulated transporter; the type 2 periplasmic-binding protein fold
Osmoprotectant binding lipoprotein ProWY of Streptococcus thermophilus is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ProWY belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270333
Aligned: 9 rows
Threshold Bit Score: 373.316
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                              ##  #                    
YP_139756  40 TIRIGSKdFTENLVVAEIYALALEDngyKVQRVSNISss-lIHRSLInkEIDLYPEYTGTGLLsilkep-metdsQKVYE 117 Streptococcus ther...
ABR35663   36 TIRIGSKdFTENSIVGEVYALALEDkgyKVERVPNIAss-vIHTSLVndEIDLYPEYTGTGLLailkkd-litdpKQVYD 113 Clostridium beijer...
EEP28183   32 AIRIGSKgFTENEIVAEVYALALEDaglKVERTPDLGss-iIHQSLTtgDIDLYPEYTGTGLIsvlkee-prtsaNEVYQ 109 Shuttleworthia sat...
EFL86812   32 AIRVGTKdFTENLVVGELYALALEDagyTVKRVFTIAgs-vVHASIVngEIDLYPEYTGTGLLtvlkme-amadpAQVYA 109 Desulfovibrio sp. ...
EEA90322   39 AVTVGSKaFTEGVILSELYALALEDagiQVKRSFEISgs-lIHTALTsgDIDLYPEYTGTGLIsvlqma-pitdpQKAYD 116 Collinsella sterco...
ADU26424   34 TVTIGSKdSTENLLVAEVYALALKDngfHVNRKFKINst-lIHSALTsgQIDLYPEYTSTGLLavlklp-litdpQNVYN 111 Ethanoligenens har...
EEJ71957   40 PITIGSKnFTESKIVMQIYADALKKegyNVKTKPNISss-vVYQAIKsgQIDLYPEYTGTIAMtylkghivgktpAQIAK 118 Lactobacillus ultu...
EEJ40338   35 PIIVGSKsFSESKTVSEIYALALEHagyKVVRKPNISns-vVFRAVKtgQIDVYPEYTGTIVEaylkks-angksASQMA 112 Lactobacillus vagi...
EFH86720   45 NLVVGGKlDVESQLLTKMYTLLLQKagyKVTEKPALGnsniVFQAISsgSIDIYPEFTATGLNklqvp--ttydpQKDYL 122 Ktedonobacter race...
Feature 1                          # #                                                        
YP_139756 118 TVKKDYEKkfKVTWLKYASANDGQGLVIRTDIANQlgIKTISDLQrhaselNFASQgefdqredgLPGLAKIYGdf--sW 195 Streptococcus ther...
ABR35663  114 TVKSEYEKqfNLEWLDYSPANDGQGLVIRTDVANKlgIKTISDLQkhageiRFASQgefdkredgIPGLEKVYGkf--dF 191 Clostridium beijer...
EEP28183  110 EVKKAYEDkfKISWLDYSPANDGQGIVITKAASDQygIKTISDLQknaeriRFASQgefdqrtdgIPALTAKYGef--hW 187 Shuttleworthia sat...
EFL86812  110 TVKREYARrfNLVWLEPSRANDSQGLALKTSVAREfgIATISDLQrnahkiRFASQgefdqradgLPGLEQVYGpf--rW 187 Desulfovibrio sp. ...
EEA90322  117 TVKEAYARefDLTWLDQSPAADGQGLVIRTDVAEKygIETISDLQqhapelRFASQgqfderpdgLPALEATYGpf--dW 194 Collinsella sterco...
ADU26424  112 TVKVDYLKqfNLVWLNYSPANDSQCLVITQAASAKynIRTISDLQkgasqiRFASQdpfdqrsdgMPALTVAYGpf--hF 189 Ethanoligenens har...
EEJ71957  119 IAKDGMAKq-NLVTLNYAPGSDSQGIAIKTSVAKKygIKTISDLQkkankiRFASQgefdkredgIPGLEKVYGkf--nF 195 Lactobacillus ultu...
EEJ40338  113 SLAQNGVKkdGLVTFNYAPGDNRQGIGMRTSVAKKynIKTLSDLQknashiRFVSQgefdkradaLPGMNKKYGky--nF 190 Lactobacillus vagi...
EFH86720  123 AVKDGFDKnyKLTWLDAAPLNDGYALCTSKETSQKlgITSISDVKakasqlALTSPsdg---vsfVDGLQKVYGlttksF 199 Ktedonobacter race...
Feature 1                              #                        #                             
YP_139756 196 KSSKVYdnslKYTVLDNkeadVTPAYTTEgqlintdKYLLLKddkhfWPPYNLAPIVRDdvlksnpKIESTLNKiskkLD 275 Streptococcus ther...
ABR35663  192 KSTKVYdnglKYEVLANneadLAPASTTEgql-vkpEFTLLEddkhvWPPYNLAPVIKKsvldahpDIADILNKvsasLD 270 Clostridium beijer...
EEP28183  188 KSTNVYdnalKYQVLDQnqadAAPAYTTEgqlsdtsKYVLLEddkqaWPPYNLAPVVRDevleknpKIAEALNKispkIT 267 Shuttleworthia sat...
EFL86812  188 KSSRVFdnglKYQVLLDdeadLVPAYTTEgrladtkKFTLLRddkhmWSPYYLAPVIRAdvlaahpDIAGILNRvsasLD 267 Desulfovibrio sp. ...
EEA90322  195 KERAIFdeglKYEVLRNdemdVTPAYTTEaql-tddAFTLLEddkrvWPPYNVAPVVRSevleanpAIAEALNRvsaaLT 273 Collinsella sterco...
ADU26424  190 KSEQTYdnglKYQILANdkadVTVAYATEgqlsdtsKFLVLEddkhvWPPYNLAPVVRKqvldknaKIATVLNKvsalIN 269 Ethanoligenens har...
EEJ71957  196 KSEKIYdpslKYKVLARgdgdITPASTTEgql-atkDYFALKdnknfWPAYNLVPLVREktlkanpGIKKILNKidakLT 274 Lactobacillus ultu...
EEJ40338  191 KSHKDYddslKYKIMSQnkgdAAPVSTTDgql-atsKFTLLKddkglWSPYNLVPLVNKkaakshpKMEKALNQvdakLT 269 Lactobacillus vagi...
EFH86720  200 KSTQTVdyalGFDAVKSdkaqITVCYGTDatv-pqgGFVFLKddkngFPAFNPAPVVRNdiaqkypDIASVLNPlapkLT 278 Ktedonobacter race...
Feature 1                                
YP_139756 276 TATVTKLNAKVDvegqnyqKVAQDFYK 302 Streptococcus thermophilus LMG 18311
ABR35663  271 TKKITKLNAEVDvdkkeyeEVAKEYYD 297 Clostridium beijerinckii NCIMB 8052
EEP28183  268 TENITRANAEVDlkgkeykDVAKELYE 294 Shuttleworthia satelles DSM 14600
EFL86812  268 TGTMTALNAKVDvdkreiaDVAKEFYL 294 Desulfovibrio sp. 3_1_syn3
EEA90322  274 TEDLTRLNARVDidkeeyeDVARDFYE 300 Collinsella stercoris DSM 13279
ADU26424  270 TKTMTQLNAKVDvnkqnyeDVAKTFYD 296 Ethanoligenens harbinense YUAN-3
EEJ71957  275 TKELTLLNKKVDvdgksyqSVAKDWLN 301 Lactobacillus ultunensis DSM 16047
EEJ40338  270 TKQLTSLNKKVDvdgqnykTVAKNWYN 296 Lactobacillus vaginalis ATCC 49540
EFH86720  279 TDVSIQLQTQVAqkksdgaSVSRAVTL 305 Ktedonobacter racemifer DSM 44963

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