Conserved Protein Domain Family
PBP2_Opu_like_2

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cd13613: PBP2_Opu_like_2 
Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold
This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270331
Aligned: 11 rows
Threshold Bit Score: 397.094
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                               ##  #                   
CCB89354   36 RIIIGAK-DTTGQIISEVLAQVLRDrtdlVFEVKPAYEgf-iCFQALQssAIDLYIEYTGTALStilhkdyrelaeERVF 113 Simkania negevensis Z
ACO32042   34 HIVIGAKdFTEQTLLGELLAQEIEAkthlKVDRHFYLAgsyiCQQALLagRIDAYVEYTGTALTailkqp-idrnpQQVF 112 Acidobacterium cap...
AEP13325  250 PVVVGSKdFTESVILAEVLAQALEArg-vAVERRYELGgn-lAHTSLLagAVDVYPEYTGTAWTailgqr-pltdpQRVY 326 Candidatus Chlorac...
NP_485017  31 DIIVASKdFTEQDILGEILSQQIEEttnlKVARRPRLGgsfvCHNAILagKIDAYIEYTGTAFTgilkqp-vinnpQVVY 109 Nostoc sp. PCC 7120
ABJ82197   11 EIVVGSKnFTEQVLLGEILAQHIERrlhvTVGRKFNLGgtllAQAAITsgAIDLYPEYSGTALTavlklp-pskdaGAVM 89  Solibacter usitatu...
EGK86426   31 QVVICSKdFTEQVILAEILARHIEAktdiKVERELNLGgs-lCHQSLTtgKIDLYVEYTGTAYAnllkqk-pisdpKKVL 108 Microcoleus vagina...
CBE69051  246 RVIIGSKnFSEQVILGELLAQVIEQttdlSVERRLNLGgtfiSDQALQsgAIDAYVEYTGTALTaifhqp-vlrdhADVL 324 NC10 bacterium 'Du...
EAQ74897  254 RITVGSKsFTEQIILGELLAQQIERhsslQVERQFSLGgtaiCQEAVRsgRIAAYVEYSGTAWMtilqqp-plreaTTML 332 Synechococcus sp. ...
EFA69126  276 TITIGSKnFTEQVILGEILAQQIENntqlRVERKFNLGgtfvCHEAVKagKIAGYVEYTGTAFTailkek-pitdpQAVY 354 Cylindrospermopsis...
ACK69671  246 TVIIGSKnFTEQVILGELLAQEIEAktnlTVDRRLNLGgtfiCHEAVKtgQIDGYVEYTGTSYTailkkn-pisdrEKVY 324 Cyanothece sp. PCC...
ADW69394   23 RITIGAKnFTEQVVLGELLAQQIEAethqKVDRRFYLAgsylCHQALVsgRIDAYPEYTGTALTailkqp-ldrdpARVD 101 Granulicella sp. M...
Feature 1                           # #                                                       
CCB89354  114 EFLNQEFIRrfALEWMPPVGFEAAYVILTRPGFAAKhglktlsdlqtllardpkiRVAFDpefy-arpeEKVLEKGYGme 192 Simkania negevensis Z
ACO32042  113 DTVQRLYQQryHVTVFPSLGFQNTFAMVVRPSTARRlrvttlsq---lvpdashlRLGVGyefqtrpdgLRGLEKAYGmh 189 Acidobacterium cap...
AEP13325  327 TEVRQTYAArfGLVVGPPLGFRNDFAILVRRQTAVEyglrtisd---aaraplrwRAGFGqdfmsradgYAGFCATYGfd 403 Candidatus Chlorac...
NP_485017 110 EKLKQAYNQqfQLEVMPSLGFENTFAIIVRGEDARRykiqtltd---aaqytpqwRGGFGyefleredgFPGLAKTYAlk 186 Nostoc sp. PCC 7120
ABJ82197   90 QQVRDGYRRqwGLEWLPPLGFNNTFAMMVRGDIARPtgiktltd----aarlqawKLGAGyefkqrtdgLAGLLATYGlr 165 Solibacter usitatu...
EGK86426  109 DYLKQEYPKqfKAEWTEPLGFNNSFAIIVRGEDAKKlnlqtlsq---lgkaapnlRAGFGpefneredgFPGLAKTYGik 185 Microcoleus vagina...
CBE69051  325 ERVTAAYAAt-GRTVLSPLGFNNTFAILIRAADAQRlnlttisd---aaphtpgwKAAFGyefleredgYKGLVRTYGlr 400 NC10 bacterium 'Du...
EAQ74897  333 ERTRSLYRDrfDLEVFPSLGFENTFAVLVRQETARRlklttise---aavhtpgwRAGFGyeflnradgYTGLASSYGls 409 Synechococcus sp. ...
EFA69126  355 EKTKQAYQEkyKLTMMPSLGFENNYALIIRSEDAKKwqvknlsq---iasysnqlKAGFGyefleradgYPGLSKTYQlq 431 Cylindrospermopsis...
ACK69671  325 QQVKQFYGDqlNLEVFPSLGFENTYAIVIRREYAEKyqvktlse---iakytpnwKAGFGheflsrkdgYPGLAKTYGlk 401 Cyanothece sp. PCC...
ADW69394  102 ETITRLYEDrfHIKVEPSLGFNDTFAMVVRGADAEKhhwktisd---vlpvastlRLGVGyefqarpdgLDGLQSTYGlh 178 Granulicella sp. M...
Feature 1                                #                       #                            
CCB89354  193 -fkTLSLLdhplIYLSLVNeavdVIDGYATDgfilehRLVTLeddlSLFPPYQAAAIVRQdvlkkhpEIRKVFdeisGKI 271 Simkania negevensis Z
ACO32042  190 fagTPRVMdlglLYRALEShqvdIIAANSTDgpiaaaHLVILkddrHFFPPYQAVPLVSDaalrrwpQIRPVLaslaGKI 269 Acidobacterium cap...
AEP13325  404 -fqSPREMdlalTYRALAAgeldIIAGNATDgliaalDLVALeddrHYFPPYQAVYVVRQaawsevpALAEVVsslaGAI 482 Candidatus Chlorac...
NP_485017 187 ftkPPQIMdlglIYRALMQkqvdMVAGNSTDgqiarlGLVVLkddqQYFPPYEATPIVRQetlrkypQLKTAIaqltGRI 266 Nostoc sp. PCC 7120
ABJ82197  166 tdgEPVTMdlglLYAALKSrkvdMIAANSTDglaavlDVKMLeddrHYFPPYECAVVARAeslarhaGLREALaevsGKL 245 Solibacter usitatu...
EGK86426  186 freEPKELllglLYQALQQkevdVIAGNTTDgliqslGLVVLkddkNYFPPYEAVPVVRSqvlekypELRQVIgelgGKI 265 Microcoleus vagina...
CBE69051  401 faeTPHVMdltlSYRALAGgsvdLIAGEATSglikglDLTMLeddrRYFPPYHAIPVVRTetladypELRTAIerlaGRI 480 NC10 bacterium 'Du...
EAQ74897  410 fatRPVSMdlglVYRALADgqvdLIAGDSTNgliptlRLKALeddrHYFPPYQAVPVVNGailrrhpEIGRAIkglqGKL 489 Synechococcus sp. ...
EFA69126  432 -faDIKQMelglMYEALKQkqvdLIAANSTDglipvlDLVILaddkKYFPPYQAVPVFNQqilekypELEPAInqlvGKI 510 Cylindrospermopsis...
ACK69671  402 faqPPEAMelglIYQAISQkqvdLVAGSSTDglipvlNLVILeddkRYFPPYDAVPIFNKntlekypQLEKVIselgGFI 481 Cyanothece sp. PCC...
ADW69394  179 fgaRPRVMdlglLYRSLASnqvdIVAGNSTDgpikalGFRILeddrHYFPPYEAVPLVREdslaahpEIQTAMnklaGKI 258 Granulicella sp. M...
Feature 1                                 
CCB89354  272 TLEKMIQMNYevenkgknvyHVAQQFLK 299 Simkania negevensis Z
ACO32042  270 TAAGMRQMNEevdgehrdpaAVIREFRK 297 Acidobacterium capsulatum ATCC 51196
AEP13325  483 STTTMQRMNYavdgekrtprEVAADFWA 510 Candidatus Chloracidobacterium thermophilum B
NP_485017 267 SADEMRQLNYlvegelqdvkEVAREFRK 294 Nostoc sp. PCC 7120
ABJ82197  246 NDATMRKLNFgvdgehrppaQVAGQFLD 273 Solibacter usitatus Ellin6076
EGK86426  266 SEEDMRKLNYqvdkqqqeagQVAREFLQ 293 Microcoleus vaginatus FGP-2
CBE69051  481 SETSMRRMNYdvdvshrdvaVVAREFLD 508 NC10 bacterium 'Dutch sediment'
EAQ74897  490 SAQTMQRLNAqvdengeavgQVVNRFLD 517 Synechococcus sp. WH 5701
EFA69126  511 STTQMQKMNYqvdnqslaveDVVREWLK 538 Cylindrospermopsis raciborskii CS-505
ACK69671  482 SAEEMQQLNYqvdsqareveEVVKEFLK 509 Cyanothece sp. PCC 7424
ADW69394  259 TAEQMQQMNDqvdgkhqdvaEVVRHFRQ 286 Granulicella sp. MP5ACTX9

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